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Clc06G07360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G07360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMuDRA-like transposase
Genome locationClcChr06:7904955..7907368
RNA-Seq ExpressionClc06G07360
SyntenyClc06G07360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047473.1 MuDRA-like transposase [Cucumis melo var. makuwa]5.6e-0632.79Show/hide
Query:  IDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAITKQET----EHWQVNLAF-------------------QC-GKQFDQMTKNVAESLDT
        +D N QIY + F VVD E DD+  WF ++      +  ++  +T Q+T    E W+  LAF                    C G+Q++ MT N+AES+++
Subjt:  IDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAITKQET----EHWQVNLAF-------------------QC-GKQFDQMTKNVAESLDT

Query:  TLKDARMLPITKFLDHIREVFK
         LK+ R LPI  F++H+R + +
Subjt:  TLKDARMLPITKFLDHIREVFK

KAA0065660.1 hypothetical protein E6C27_scaffold90G001190 [Cucumis melo var. makuwa]2.4e-0961.54Show/hide
Query:  VVLLTAQSPAESVRPALTQNDPYYPNKEMESFMGQDYPGVKTKPTHGKVCKKS-PYSKCKPPISD
        V+LL+AQS AE  RPALTQ+DPYYPNKE+ES     + G    P  GK C+K  PYSKCKPP+SD
Subjt:  VVLLTAQSPAESVRPALTQNDPYYPNKEMESFMGQDYPGVKTKPTHGKVCKKS-PYSKCKPPISD

KAG7547920.1 FAR1 DNA binding domain [Arabidopsis suecica]2.1e-0531.5Show/hide
Query:  MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWFFK------RDRKDIEAITKQETE-------------------HWQVNLAFQ--------CGKQFDQMT
        +L+ ++ D N QI+ + F +VDGE D AW WFF+       D  ++  ++ + +                    H Q N+A +         G++++ MT
Subjt:  MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWFFK------RDRKDIEAITKQETE-------------------HWQVNLAFQ--------CGKQFDQMT

Query:  KNVAESLDTTLKDARMLPITKFLDHIR
         NVAESL+  LK+AR LPI   L++IR
Subjt:  KNVAESLDTTLKDARMLPITKFLDHIR

XP_022154925.1 uncharacterized protein LOC111022071 [Momordica charantia]1.6e-0529.01Show/hide
Query:  SIDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAIT-----------KQETEHWQVNLA---------------------FQCGKQFDQMT
        ++D N QIY + F +VD E D +W WF K       D++++  I+            Q T +W   L+                     +Q G++++  T
Subjt:  SIDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAIT-----------KQETEHWQVNLA---------------------FQCGKQFDQMT

Query:  KNVAESLDTTLKDARMLPITKFLDHIREVFK
         N AES++  L++AR LPITK ++ IRE+ +
Subjt:  KNVAESLDTTLKDARMLPITKFLDHIREVFK

XP_038904344.1 uncharacterized protein LOC120090698 [Benincasa hispida]1.5e-0650Show/hide
Query:  FQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIR----EVFKPKVTSNSPSSSWVFTKNYIENKVT
        FQCG++F+QMT N  +SL+  LKDAR LPITKFLDHIR    + F P+  +   SS      +Y E K+T
Subjt:  FQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIR----EVFKPKVTSNSPSSSWVFTKNYIENKVT

TrEMBL top hitse value%identityAlignment
A0A5A7V6Q4 MuDRA-like transposase1.4e-0533.67Show/hide
Query:  MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWFFKRDRKDIEAITKQETEHWQVNLAFQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIREVFK
        ++ V  +D N QIY + F VVD E DD+  WF       +E +     E W   + +  G++++ MT N+AES+++ LK+ + LPI  FL+++R + +
Subjt:  MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWFFKRDRKDIEAITKQETEHWQVNLAFQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIREVFK

A0A5A7VEN6 Uncharacterized protein1.2e-0961.54Show/hide
Query:  VVLLTAQSPAESVRPALTQNDPYYPNKEMESFMGQDYPGVKTKPTHGKVCKKS-PYSKCKPPISD
        V+LL+AQS AE  RPALTQ+DPYYPNKE+ES     + G    P  GK C+K  PYSKCKPP+SD
Subjt:  VVLLTAQSPAESVRPALTQNDPYYPNKEMESFMGQDYPGVKTKPTHGKVCKKS-PYSKCKPPISD

A0A5D3BIZ2 MuDRA-like transposase2.7e-0632.79Show/hide
Query:  IDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAITKQET----EHWQVNLAF-------------------QC-GKQFDQMTKNVAESLDT
        +D N QIY + F VVD E DD+  WF ++      +  ++  +T Q+T    E W+  LAF                    C G+Q++ MT N+AES+++
Subjt:  IDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAITKQET----EHWQVNLAF-------------------QC-GKQFDQMTKNVAESLDT

Query:  TLKDARMLPITKFLDHIREVFK
         LK+ R LPI  F++H+R + +
Subjt:  TLKDARMLPITKFLDHIREVFK

A0A6J1DK28 uncharacterized protein LOC1110207872.3e-0528.57Show/hide
Query:  MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWF-------------------------FKRDRKD------IEAITKQETEHWQVNL--------------
        +L  +S+D N QIY + F +VD E D +W WF                         FK D          +A  K E  ++   L              
Subjt:  MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWF-------------------------FKRDRKD------IEAITKQETEHWQVNL--------------

Query:  ------AFQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIREVFKPKVTSNSP--SSSWVFTKNYIENKVTYAESNAR
              AFQ G ++DQMT N+AES++  L  AR LP+T  L+H R + +          SS      +Y ENK+  AE+ +R
Subjt:  ------AFQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIREVFKPKVTSNSP--SSSWVFTKNYIENKVTYAESNAR

A0A6J1DL08 uncharacterized protein LOC1110220717.9e-0629.01Show/hide
Query:  SIDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAIT-----------KQETEHWQVNLA---------------------FQCGKQFDQMT
        ++D N QIY + F +VD E D +W WF K       D++++  I+            Q T +W   L+                     +Q G++++  T
Subjt:  SIDDNAQIYLVTFVVVDGEMDDAWMWFFKR------DRKDIEAIT-----------KQETEHWQVNLA---------------------FQCGKQFDQMT

Query:  KNVAESLDTTLKDARMLPITKFLDHIREVFK
         N AES++  L++AR LPITK ++ IRE+ +
Subjt:  KNVAESLDTTLKDARMLPITKFLDHIREVFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGTGTGAACTCAATTGATGACAATGCACAGATATACCTGGTAACGTTTGTCGTGGTGGATGGTGAGATGGATGATGCATGGATGTGGTTCTTTAAGAGGGACAG
GAAGGACATTGAGGCCATAACAAAACAGGAAACTGAACATTGGCAAGTCAATTTGGCCTTTCAGTGTGGCAAACAATTTGATCAGATGACGAAAAATGTAGCTGAAAGCC
TAGACACCACTTTGAAGGATGCTAGGATGCTACCGATTACCAAATTTCTTGATCATATACGGGAAGTATTCAAACCTAAAGTTACAAGCAATTCTCCATCGTCCTCGTGG
GTTTTTACCAAAAATTACATAGAAAATAAAGTTACTTATGCAGAATCCAACGCACGAATTGAGATATGGCCAAAATTGAATGAAGATTCAATCGTTTTCGGGAAGAAGAT
GAAGGAGAGTGTTTCGAGAATGAGGGTGGTGCTTCTCACCGCTCAGTCTCCGGCGGAGTCTGTCCGGCCAGCGCTAACTCAAAATGATCCTTATTACCCTAATAAGGAAA
TGGAGTCGTTCATGGGTCAGGACTACCCTGGTGTCAAGACCAAACCTACCCATGGAAAAGTATGCAAAAAAAGCCCATATTCGAAGTGCAAGCCACCCATTTCTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGTGTGAACTCAATTGATGACAATGCACAGATATACCTGGTAACGTTTGTCGTGGTGGATGGTGAGATGGATGATGCATGGATGTGGTTCTTTAAGAGGGACAG
GAAGGACATTGAGGCCATAACAAAACAGGAAACTGAACATTGGCAAGTCAATTTGGCCTTTCAGTGTGGCAAACAATTTGATCAGATGACGAAAAATGTAGCTGAAAGCC
TAGACACCACTTTGAAGGATGCTAGGATGCTACCGATTACCAAATTTCTTGATCATATACGGGAAGTATTCAAACCTAAAGTTACAAGCAATTCTCCATCGTCCTCGTGG
GTTTTTACCAAAAATTACATAGAAAATAAAGTTACTTATGCAGAATCCAACGCACGAATTGAGATATGGCCAAAATTGAATGAAGATTCAATCGTTTTCGGGAAGAAGAT
GAAGGAGAGTGTTTCGAGAATGAGGGTGGTGCTTCTCACCGCTCAGTCTCCGGCGGAGTCTGTCCGGCCAGCGCTAACTCAAAATGATCCTTATTACCCTAATAAGGAAA
TGGAGTCGTTCATGGGTCAGGACTACCCTGGTGTCAAGACCAAACCTACCCATGGAAAAGTATGCAAAAAAAGCCCATATTCGAAGTGCAAGCCACCCATTTCTGACTGA
Protein sequenceShow/hide protein sequence
MLSVNSIDDNAQIYLVTFVVVDGEMDDAWMWFFKRDRKDIEAITKQETEHWQVNLAFQCGKQFDQMTKNVAESLDTTLKDARMLPITKFLDHIREVFKPKVTSNSPSSSW
VFTKNYIENKVTYAESNARIEIWPKLNEDSIVFGKKMKESVSRMRVVLLTAQSPAESVRPALTQNDPYYPNKEMESFMGQDYPGVKTKPTHGKVCKKSPYSKCKPPISD