; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G07500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G07500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2H2-type domain-containing protein
Genome locationClcChr06:8149663..8150418
RNA-Seq ExpressionClc06G07500
SyntenyClc06G07500
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050710.1 hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa]3.9e-7073.82Show/hide
Query:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL
        MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS    R Q+QQ+    RFP GP FLTP RA+A+FLP+RFS+PNS+
Subjt:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL

Query:  GFDAAESLWPN-QLSPFARSLFREAPPP-------VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
        GF+ AES+W N Q+SPF RS+FR+  PP       VG+YFTNLI  +E  GDCTKPYINQLEKCLPKVG GGEEDD RQLY SK+DLTLKL
Subjt:  GFDAAESLWPN-QLSPFARSLFREAPPP-------VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL

KAB1219262.1 hypothetical protein CJ030_MR3G001255 [Morella rubra]4.7e-0733.49Show/hide
Query:  MAEFGRGTA-ADLHHLRP-LPIPGSPL-VACRICDAVFSSSQALINHIGAHVSDE----------GATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASA
        MAE+G   +  ++H L P    P SP  +ACR+CD VF S+QALINHI +H+ +E          G  S       N      +   P P  +T P    
Subjt:  MAEFGRGTA-ADLHHLRP-LPIPGSPL-VACRICDAVFSSSQALINHIGAHVSDE----------GATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASA

Query:  LFLPSRFSAPNS----LGFD---AAESLWPNQLSPFARSLFREAPPPVGRYFTNLIV------TEEAVGDCTKPYINQLEKCLPKVGD--GGEEDDGRQL
           P+   A +     LG D   A+    P Q  P AR+ F  AP         LIV       E+   DCTKPY+NQL+  +  V D  G  +D   + 
Subjt:  LFLPSRFSAPNS----LGFD---AAESLWPNQLSPFARSLFREAPPPVGRYFTNLIV------TEEAVGDCTKPYINQLEKCLPKVGD--GGEEDDGRQL

Query:  YFS-KLDLTLKL
             LDL LKL
Subjt:  YFS-KLDLTLKL

KAB8495643.1 hypothetical protein FH972_025385 [Carpinus fangiana]7.5e-1336.55Show/hide
Query:  HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFP---------PGPPFLTPPRASALFLPSRFSAPN-----
        H  R  P      +ACR+CD VF S+QALINHI +H+++E +T+A+ SR   Q R+ T R P           P F T P  + L L  R S P+     
Subjt:  HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFP---------PGPPFLTPPRASALFLPSRFSAPN-----

Query:  -----SLGFDAAESLWPNQLSPFARSLFREAP-----PPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYF--SKLDLTLKL
             S       +L P Q+SP AR     AP      P G+    ++  EE +GDCTKPY++QLE  +  V    + +D     F  +KLDL LKL
Subjt:  -----SLGFDAAESLWPNQLSPFARSLFREAP-----PPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYF--SKLDLTLKL

KAE8651808.1 hypothetical protein Csa_006798 [Cucumis sativus]1.3e-6873.3Show/hide
Query:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL
        MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS      Q+QQR    RFP GP FLT PRA+A+FLP+R+S+PN +
Subjt:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL

Query:  GFDAAESLWPNQLSPFARSLFREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
        GF+ AES+W NQ+SPF RS+FRE      PPP  +G+YFTNLI  EE   GDCTKPYINQLEKCLPKVG+GGEEDD RQLY SK+DLTLKL
Subjt:  GFDAAESLWPNQLSPFARSLFREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL

KAG6574909.1 hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia]6.4e-8184.13Show/hide
Query:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSA-PNS
        MAEFGR TAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGA+SAAASRRQ+QQRSQTHR PPG     PPRA+A+FLPSR+S  PNS
Subjt:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSA-PNS

Query:  LGFDAAESLWPNQLSPFARSLFREA----PPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKV-GDGGEEDDGRQLYFSKLDLTLKL
        LGFDAAESLWPNQLSPFARSLFRE     PPPVG+Y TN    EEA GDCTKPYINQLEKCLPKV G GGEEDDGRQLYFSKLDL+L+L
Subjt:  LGFDAAESLWPNQLSPFARSLFREA----PPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKV-GDGGEEDDGRQLYFSKLDLTLKL

TrEMBL top hitse value%identityAlignment
A0A0A0LNN3 C2H2-type domain-containing protein4.8e-5871.1Show/hide
Query:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL
        MA+F R T ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS      Q+QQR    RFP GP FLT PRA+A+FLP+R+S+PN +
Subjt:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL

Query:  GFDAAESLWPNQLSPFARSLFREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGE
        GF+ AES+W NQ+SPF RS+FRE      PPP  +G+YFTNLI  EE   GDCTKPYINQLEKCLPKV  G E
Subjt:  GFDAAESLWPNQLSPFARSLFREA-----PPP--VGRYFTNLIVTEE-AVGDCTKPYINQLEKCLPKVGDGGE

A0A2N9E7H8 C2H2-type domain-containing protein5.8e-1133.33Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQ-----NQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLW-----------
        +ACR+CD VF S+QALINHI +H+ +E ATS    R       +Q+    + F P      PPR +     +R      L        +           
Subjt:  VACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQ-----NQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSLGFDAAESLW-----------

Query:  -PNQLSPFARSLFREAPPP---VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLY--FSKLDLTLKL
         P  +SP AR+ F  A PP   +        + EE  GDCTKPY+NQL+  + K+ D  + +D        +KLDL LKL
Subjt:  -PNQLSPFARSLFREAPPP---VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLY--FSKLDLTLKL

A0A5A7U6B7 C2H2-type domain-containing protein1.9e-7073.82Show/hide
Query:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL
        MA+F RGT ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS    R Q+QQ+    RFP GP FLTP RA+A+FLP+RFS+PNS+
Subjt:  MAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLPSRFSAPNSL

Query:  GFDAAESLWPN-QLSPFARSLFREAPPP-------VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL
        GF+ AES+W N Q+SPF RS+FR+  PP       VG+YFTNLI  +E  GDCTKPYINQLEKCLPKVG GGEEDD RQLY SK+DLTLKL
Subjt:  GFDAAESLWPN-QLSPFARSLFREAPPP-------VGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL

A0A5N6L1V8 C2H2-type domain-containing protein3.6e-1336.55Show/hide
Query:  HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFP---------PGPPFLTPPRASALFLPSRFSAPN-----
        H  R  P      +ACR+CD VF S+QALINHI +H+++E +T+A+ SR   Q R+ T R P           P F T P  + L L  R S P+     
Subjt:  HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFP---------PGPPFLTPPRASALFLPSRFSAPN-----

Query:  -----SLGFDAAESLWPNQLSPFARSLFREAP-----PPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYF--SKLDLTLKL
             S       +L P Q+SP AR     AP      P G+    ++  EE +GDCTKPY++QLE  +  V    + +D     F  +KLDL LKL
Subjt:  -----SLGFDAAESLWPNQLSPFARSLFREAP-----PPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYF--SKLDLTLKL

A0A6A1W232 C2H2-type domain-containing protein2.3e-0733.49Show/hide
Query:  MAEFGRGTA-ADLHHLRP-LPIPGSPL-VACRICDAVFSSSQALINHIGAHVSDE----------GATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASA
        MAE+G   +  ++H L P    P SP  +ACR+CD VF S+QALINHI +H+ +E          G  S       N      +   P P  +T P    
Subjt:  MAEFGRGTA-ADLHHLRP-LPIPGSPL-VACRICDAVFSSSQALINHIGAHVSDE----------GATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASA

Query:  LFLPSRFSAPNS----LGFD---AAESLWPNQLSPFARSLFREAPPPVGRYFTNLIV------TEEAVGDCTKPYINQLEKCLPKVGD--GGEEDDGRQL
           P+   A +     LG D   A+    P Q  P AR+ F  AP         LIV       E+   DCTKPY+NQL+  +  V D  G  +D   + 
Subjt:  LFLPSRFSAPNS----LGFD---AAESLWPNQLSPFARSLFREAPPPVGRYFTNLIV------TEEAVGDCTKPYINQLEKCLPKVGD--GGEEDDGRQL

Query:  YFS-KLDLTLKL
             LDL LKL
Subjt:  YFS-KLDLTLKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAATTCAATCGCCCTTTGTTTCTTCAGGCCCTCCTCCTCCACCGCCGCGGCCATGGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCT
TCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTAGCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCA
CCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCGCCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCA
AGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAATCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGT
CGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGCCTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTG
AAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA
mRNA sequenceShow/hide mRNA sequence
AGACATTTTTCCTTTACCTATAAATTGCCTCCCAATTCCTCAAACCTTTCAATGCAAAATTCAATCGCCCTTTGTTTCTTCAGGCCCTCCTCCTCCACCGCCGCGGCCAT
GGCTGAATTTGGCCGAGGAACCGCCGCCGATCTCCACCATCTACGCCCTCTTCCAATTCCCGGCAGTCCGCTTGTCGCTTGCCGAATCTGCGACGCTGTGTTTTCCAGTA
GCCAAGCGCTAATTAACCACATCGGAGCTCACGTGTCCGATGAAGGCGCCACCTCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAGCCAAACGCATCGGTTTCCG
CCTGGTCCCCCGTTCTTAACGCCGCCACGAGCGTCGGCGCTGTTTCTGCCAAGTAGATTTTCAGCGCCTAATTCGCTAGGTTTTGACGCGGCGGAATCGCTTTGGCCAAA
TCAACTCTCTCCATTCGCAAGAAGCCTGTTTAGAGAGGCGCCGCCGCCCGTCGGTCGGTACTTTACGAATTTGATTGTGACGGAGGAGGCGGTCGGCGATTGTACGAAGC
CTTATATAAACCAATTGGAGAAATGTTTACCGAAAGTGGGCGACGGAGGTGAAGAAGACGACGGCCGTCAACTGTATTTCAGCAAACTAGACTTGACCCTGAAGCTGTGA
AATGGAATCGAATCAAAATGTAGGCAGAAAAAGAACGTTAGCCTTTCTTTCTAATATATATATATACATTATTTTATATATTATTTTACTTTTTTC
Protein sequenceShow/hide protein sequence
MQNSIALCFFRPSSSTAAAMAEFGRGTAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSAAASRRQNQQRSQTHRFPPGPPFLTPPRASALFLP
SRFSAPNSLGFDAAESLWPNQLSPFARSLFREAPPPVGRYFTNLIVTEEAVGDCTKPYINQLEKCLPKVGDGGEEDDGRQLYFSKLDLTLKL