CuGenDBv2

Gene ID	Clc06G07940
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	late embryogenesis abundant protein 1-like
Genome location	ClcChr06:8653990..8654833
RNA-Seq Expression	Clc06G07940
Synteny	Clc06G07940
Gene Ontology terms	NA
InterPro domains	IPR039624 - Stress-induced protein KIN1/KIN2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031971.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa]

1.7e-27

71.43

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD
        MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVD
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD

Query:  TVKETLGMGDKK
        TVKETLGMGDKK
Subjt:  TVKETLGMGDKK

XP_008460707.2 PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]

1.7e-27

71.43

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD
        MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVD
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD

Query:  TVKETLGMGDKK
        TVKETLGMGDKK
Subjt:  TVKETLGMGDKK

XP_011649123.1 late embryogenesis abundant protein D-7 [Cucumis sativus]

1.7e-24

66.96

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD
        MSNMQQSLNAGQTKGQTQ                 RTEEWMEA K  PT+EP +MS NS Q QL   SA HS HQ  QEP + LQQTGEKMVHMAQ AVD
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD

Query:  TVKETLGMGDKK
        TVKETLGMGDKK
Subjt:  TVKETLGMGDKK

XP_016902588.1 PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo]

1.1e-21

76.14

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Query:  TQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        TQ KIE    ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Subjt:  TQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

XP_023000573.1 late embryogenesis abundant protein 1-like [Cucurbita maxima]

1.5e-20

61.47

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPRE-MSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVK
        MS+MQQS NA QT                +++S+ARTEEWMEA +S  +EPR+ +  +S Q QL    SAH +KQEPTTFLQQTGEKMVHMAQDAVDTVK
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPRE-MSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVK

Query:  ETLGMGDKK
        ETLGMGDKK
Subjt:  ETLGMGDKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LI39 Uncharacterized protein

8.4e-25

66.96

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD
        MSNMQQSLNAGQTKGQTQ                 RTEEWMEA K  PT+EP +MS NS Q QL   SA HS HQ  QEP + LQQTGEKMVHMAQ AVD
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD

Query:  TVKETLGMGDKK
        TVKETLGMGDKK
Subjt:  TVKETLGMGDKK

A0A1S3CCL5 late embryogenesis abundant protein 1 isoform X1

8.1e-28

71.43

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD
        MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVD
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD

Query:  TVKETLGMGDKK
        TVKETLGMGDKK
Subjt:  TVKETLGMGDKK

A0A1S4E2Z2 late embryogenesis abundant protein 1 isoform X2

5.1e-22

76.14

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Query:  TQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK
        TQ KIE    ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVDTVKETLGMGDKK
Subjt:  TQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

A0A5A7SQZ2 Late embryogenesis abundant protein 1 isoform X1

8.1e-28

71.43

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD
        MSNMQQSLNAGQTKGQTQ                ARTEEWMEA K  PTSEPR+MS NS Q QL   SA HS HQ  QEPT+FLQQTGEKMVHMAQ AVD
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIK-SPTSEPREMSCNSGQPQL---SAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVD

Query:  TVKETLGMGDKK
        TVKETLGMGDKK
Subjt:  TVKETLGMGDKK

A0A6J1KN05 late embryogenesis abundant protein 1-like

7.4e-21

61.47

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Query:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPRE-MSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVK
        MS+MQQS NA QT                +++S+ARTEEWMEA +S  +EPR+ +  +S Q QL    SAH +KQEPTTFLQQTGEKMVHMAQDAVDTVK
Subjt:  MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPRE-MSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVK

Query:  ETLGMGDKK
        ETLGMGDKK
Subjt:  ETLGMGDKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G13560.1 Late embryogenesis abundant protein (LEA) family protein

1.5e-05

32.71

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Query:  QQSLNAGQTKGQTQIKLFQSTQTKIETVSKA--RTEEWMEAIKSPTSEPREMSCN-SGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKET
        QQ  NAGQ +GQ Q K  Q T++  +T   A  +T +  ++ +   ++  + + + +     SA  SA   +++      QTGE + +MAQ A+D VK +
Subjt:  QQSLNAGQTKGQTQIKLFQSTQTKIETVSKA--RTEEWMEAIKSPTSEPREMSCN-SGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKET

Query:  LGMGDKK
        LGM +KK
Subjt:  LGMGDKK

Sequences

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CDS sequence

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ATGTCTAACATGCAACAAAGTTTAAATGCTGGCCAAACCAAAGGCCAGACCCAGATAAAATTGTTTCAAAGTACCCAAACAAAAATAGAAACAGTCTCAAAAGCAAGAAC
AGAAGAATGGATGGAAGCGATCAAAAGCCCAACAAGTGAACCAAGAGAGATGTCTTGTAATTCAGGCCAACCTCAGCTCTCTGCTCCACACTCTGCTCATCAAGAGAAAC
AAGAACCCACTACTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGATGCAGTGGACACAGTGAAGGAAACACTTGGAATGGGTGACAAGAAATGA

mRNA sequence

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Protein sequence

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MSNMQQSLNAGQTKGQTQIKLFQSTQTKIETVSKARTEEWMEAIKSPTSEPREMSCNSGQPQLSAPHSAHQEKQEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGDKK

Clc06G07940 (gene) of Watermelon (cordophanus) v2 genome