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Clc06G08030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPlant self-incompatibility protein S1 family
Genome locationClcChr06:8841255..8841710
RNA-Seq ExpressionClc06G08030
SyntenyClc06G08030
Gene Ontology termsNA
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9598027.1 putative plant self-incompatibility S1 [Lupinus albus]6.6e-2247.33Show/hide
Query:  IFLLMSSTIDSGDGGSDTRSLIYDKVT-VTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIK
        IFL    TI S  GGS+      DK   + IKN L     +T+HCKS+DDDLG H L++ + F F+F  NF  +TLFFC F W G LH+FDIY + RD K
Subjt:  IFLLMSSTIDSGDGGSDTRSLIYDKVT-VTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIK

Query:  VCKPYCSWNITEKGPCL-----QHRHFCFLS
        VC P C W+IT + PCL     Q    C+ S
Subjt:  VCKPYCSWNITEKGPCL-----QHRHFCFLS

KAF8012359.1 hypothetical protein BT93_I0492 [Corymbia citriodora subsp. variegata]2.5e-2152.69Show/hide
Query:  TVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHR
        +V I N LP   ++T+HCKSKDDDLG H++   + + F F PN WGTTLFFCSF WPG+ ++FD+Y   RD   C  YC WNI   GPCL ++
Subjt:  TVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHR

KAF8015470.1 hypothetical protein BT93_H1093 [Corymbia citriodora subsp. variegata]3.9e-2253.12Show/hide
Query:  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQ
        I ++V V I N LP    +T+HCKSKDDDLG+ ++     + FRF  NFWGTTLFFCSF W    HY+DIYV KRD   C+  C W +   GPCLQ
Subjt:  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQ

KCW58636.1 hypothetical protein EUGRSUZ_H01296 [Eucalyptus grandis]3.3e-2149.47Show/hide
Query:  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL
        I  KV V I N LP    +T+HC+SKD+DLG+H +     + FRF PNFWG TLFFCSF WP   H+ D++V  RD+  C+  C W++   GPCL
Subjt:  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL

XP_024924731.1 S-protein homolog 5-like [Ziziphus jujuba]2.3e-2253.12Show/hide
Query:  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDG-FNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHR
        K  VTI N L  + V+T+HCKSKDDDLG H++ + DG ++F F PN WGTT ++C+F W G  HYFDIY+  RD  +C   CSW I   GPCL +R
Subjt:  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDG-FNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHR

TrEMBL top hitse value%identityAlignment
A0A059AYA1 S-protein homolog1.6e-2149.47Show/hide
Query:  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL
        I  KV V I N LP    +T+HC+SKD+DLG+H +     + FRF PNFWG TLFFCSF WP   H+ D++V  RD+  C+  C W++   GPCL
Subjt:  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL

A0A218Y0Z8 S-protein homolog2.1e-2146.03Show/hide
Query:  FLIFLLMSSTIDSGDG--------GSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFD
        F + LL+  T  +  G            R L Y +  V I N LP +  +T+HCKSKDDDLG   LR    F F F P+FW  TLFFCSF W G  HY+D
Subjt:  FLIFLLMSSTIDSGDG--------GSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFD

Query:  IYVFKRDIKVCKPYCSWNITEKGPCL
        IYV KRD+  C   C W+I   GPCL
Subjt:  IYVFKRDIKVCKPYCSWNITEKGPCL

A0A438C5D9 S-protein homolog2.7e-2146.4Show/hide
Query:  FLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVC
        F+L+   +   DGG     +I +KV + I N L     + LHC+SKDDDLG H L     F FRF PNFWGTTL+FC F W G  H+F+IYV KRD   C
Subjt:  FLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVC

Query:  KPYCSWNITEKGPCLQHRHFCFLSI
           C W +   GPCL  R F   S+
Subjt:  KPYCSWNITEKGPCLQHRHFCFLSI

A0A6A4PDZ5 S-protein homolog3.2e-2247.33Show/hide
Query:  IFLLMSSTIDSGDGGSDTRSLIYDKVT-VTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIK
        IFL    TI S  GGS+      DK   + IKN L     +T+HCKS+DDDLG H L++ + F F+F  NF  +TLFFC F W G LH+FDIY + RD K
Subjt:  IFLLMSSTIDSGDGGSDTRSLIYDKVT-VTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIK

Query:  VCKPYCSWNITEKGPCL-----QHRHFCFLS
        VC P C W+IT + PCL     Q    C+ S
Subjt:  VCKPYCSWNITEKGPCL-----QHRHFCFLS

A0A6P6FT49 S-protein homolog1.1e-2253.12Show/hide
Query:  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDG-FNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHR
        K  VTI N L  + V+T+HCKSKDDDLG H++ + DG ++F F PN WGTT ++C+F W G  HYFDIY+  RD  +C   CSW I   GPCL +R
Subjt:  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDG-FNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHR

SwissProt top hitse value%identityAlignment
B3H7A6 S-protein homolog 198.1e-1543.43Show/hide
Query:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPC-LQHRHFCF
        V V + N +  N  + LHCKSK+ DLG   L     + FR S  FW  TLFFC F W     +FDI+V  RD+  C  +C W+I   GPC L  R  CF
Subjt:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPC-LQHRHFCF

F4JLQ5 S-protein homolog 29.6e-1636.64Show/hide
Query:  FLIFLLMSSTIDSGDGGSD---------TRSLI-YDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHY
        F++ + +++ +   D  +D         T S+    K TV I N L +   +  HCKSKDDDLG   L+  + ++F F   F+G TL+FCSF+WP   H 
Subjt:  FLIFLLMSSTIDSGDGGSD---------TRSLI-YDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHY

Query:  FDIYVFKRDI----KVCKPYCSWNITEKGPC
        FDIY   RD     K     C W I   GPC
Subjt:  FDIYVFKRDI----KVCKPYCSWNITEKGPC

F4JZG1 S-protein homolog 42.8e-1540.6Show/hide
Query:  MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFW-GTTLFFCSFNWPGA
        M+   V VV    +I+LL+         GSD +     K  VTI N L D   + LHCKS DDDLG   L     ++F+F P+   G TLFFC F WPG 
Subjt:  MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFW-GTTLFFCSFNWPGA

Query:  LHYFDIYVFKRD-IKVCKP--YCSWNITEKGPC
          +F+IY   RD +++  P  YC W+I + GPC
Subjt:  LHYFDIYVFKRD-IKVCKP--YCSWNITEKGPC

O23020 S-protein homolog 51.6e-1840.94Show/hide
Query:  CFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRD
        CF  FLL      SG GG       + + TV     L     +T+HCKSK DDLG H +     ++F+F PN W +TLFFCSF W      FDIY  +RD
Subjt:  CFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRD

Query:  IKVCKPYCSWNITEKGPC-LQHRHFCF
          +C   C W I   GPC L  +  CF
Subjt:  IKVCKPYCSWNITEKGPC-LQHRHFCF

Q3E9W6 S-protein homolog 203.6e-1544Show/hide
Query:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPY-CSWNITEKGPC-LQHRHFCF
        V V I N +  N  + LHCKSKD DLG   L     + FR + +FWG TLFFC F W     +FDI V  RD   C  + C W+I   GPC L  +  CF
Subjt:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPY-CSWNITEKGPC-LQHRHFCF

Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family1.1e-1940.94Show/hide
Query:  CFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRD
        CF  FLL      SG GG       + + TV     L     +T+HCKSK DDLG H +     ++F+F PN W +TLFFCSF W      FDIY  +RD
Subjt:  CFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRD

Query:  IKVCKPYCSWNITEKGPC-LQHRHFCF
          +C   C W I   GPC L  +  CF
Subjt:  IKVCKPYCSWNITEKGPC-LQHRHFCF

AT4G16195.1 Plant self-incompatibility protein S1 family6.8e-1736.64Show/hide
Query:  FLIFLLMSSTIDSGDGGSD---------TRSLI-YDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHY
        F++ + +++ +   D  +D         T S+    K TV I N L +   +  HCKSKDDDLG   L+  + ++F F   F+G TL+FCSF+WP   H 
Subjt:  FLIFLLMSSTIDSGDGGSD---------TRSLI-YDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHY

Query:  FDIYVFKRDI----KVCKPYCSWNITEKGPC
        FDIY   RD     K     C W I   GPC
Subjt:  FDIYVFKRDI----KVCKPYCSWNITEKGPC

AT4G24974.1 Plant self-incompatibility protein S1 family5.8e-1643.43Show/hide
Query:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPC-LQHRHFCF
        V V + N +  N  + LHCKSK+ DLG   L     + FR S  FW  TLFFC F W     +FDI+V  RD+  C  +C W+I   GPC L  R  CF
Subjt:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPC-LQHRHFCF

AT4G24975.1 Plant self-incompatibility protein S1 family2.6e-1644Show/hide
Query:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPY-CSWNITEKGPC-LQHRHFCF
        V V I N +  N  + LHCKSKD DLG   L     + FR + +FWG TLFFC F W     +FDI V  RD   C  + C W+I   GPC L  +  CF
Subjt:  VTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPY-CSWNITEKGPC-LQHRHFCF

AT5G12070.1 Plant self-incompatibility protein S1 family2.0e-1640.6Show/hide
Query:  MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFW-GTTLFFCSFNWPGA
        M+   V VV    +I+LL+         GSD +     K  VTI N L D   + LHCKS DDDLG   L     ++F+F P+   G TLFFC F WPG 
Subjt:  MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFW-GTTLFFCSFNWPGA

Query:  LHYFDIYVFKRD-IKVCKP--YCSWNITEKGPC
          +F+IY   RD +++  P  YC W+I + GPC
Subjt:  LHYFDIYVFKRD-IKVCKP--YCSWNITEKGPC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCGGCCTCCGTCGCCGTTGTTGCTCAGTGTTTCCTGATATTCCTCCTGATGTCATCCACCATCGACAGTGGCGATGGCGGCAGCGACACACGAAGTCTAATTTA
CGACAAGGTCACAGTGACGATAAAGAATACTTTACCTGACAATAAGGTGGTAACCCTTCATTGCAAGTCCAAAGACGACGATCTCGGCTACCATGATCTTCGCCATTTGG
ACGGCTTCAACTTCCGATTCAGTCCCAACTTCTGGGGTACGACGTTGTTTTTTTGCAGCTTCAATTGGCCTGGTGCCTTGCATTACTTTGACATCTATGTCTTTAAAAGA
GACATAAAGGTGTGTAAACCATACTGTTCTTGGAACATAACAGAAAAAGGGCCATGCTTGCAGCATCGTCATTTTTGTTTTCTGTCGATTAAGGACGATGATGCCAAACA
TATGTTGGGTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCGGCCTCCGTCGCCGTTGTTGCTCAGTGTTTCCTGATATTCCTCCTGATGTCATCCACCATCGACAGTGGCGATGGCGGCAGCGACACACGAAGTCTAATTTA
CGACAAGGTCACAGTGACGATAAAGAATACTTTACCTGACAATAAGGTGGTAACCCTTCATTGCAAGTCCAAAGACGACGATCTCGGCTACCATGATCTTCGCCATTTGG
ACGGCTTCAACTTCCGATTCAGTCCCAACTTCTGGGGTACGACGTTGTTTTTTTGCAGCTTCAATTGGCCTGGTGCCTTGCATTACTTTGACATCTATGTCTTTAAAAGA
GACATAAAGGTGTGTAAACCATACTGTTCTTGGAACATAACAGAAAAAGGGCCATGCTTGCAGCATCGTCATTTTTGTTTTCTGTCGATTAAGGACGATGATGCCAAACA
TATGTTGGGTGATTAA
Protein sequenceShow/hide protein sequence
MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKR
DIKVCKPYCSWNITEKGPCLQHRHFCFLSIKDDDAKHMLGD