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Clc06G08040 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08040
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr06:8946945..8947357
RNA-Seq ExpressionClc06G08040
SyntenyClc06G08040
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABY56091.1 self-incompatibility protein 1 [Cucumis melo]2.5e-4671.94Show/hide
Query:  MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDF
        M SSLAL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +         +  PHYFTIYDF
Subjt:  MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDF

Query:  KRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
        KRD KTCTNC+WLVYASGPCLQHSETSITC PW KNA E
Subjt:  KRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
ABY56092.1 self-incompatibility protein 2 [Cucumis melo]1.4e-4471.11Show/hide
Query:  LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDA
        +AL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +         +  PHYFTIYDFKRD 
Subjt:  LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDA

Query:  KTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
        KTCTNC+WLVYASGPCLQHSETSITC PW KNA E
Subjt:  KTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
KAA0046083.1 self-incompatibility protein 1 [Cucumis melo var. makuwa]9.5e-1470.77Show/hide
Query:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSL
        M LLLPI L A DELISLLPETTVTI+NEVGGPLLGIH R KQ    V+++ SD+SYSF FRP++
Subjt:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSL
KAA0046095.1 self-incompatibility protein 1 [Cucumis melo var. makuwa]1.6e-4066.67Show/hide
Query:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNC
        M LLLPI L ATDELISLLPETTV I+NEVGGPLLGIHCRSKQ    V+++  D+SYSF F P++   +         +  PHYFTIYDFKRD KTCTNC
Subjt:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNC

Query:  KWLVYASGPCLQHSETSITCSPWIKNALE
        +WL+YASGPCLQHS+TS+TC PW KNA E
Subjt:  KWLVYASGPCLQHSETSITCSPWIKNALE
KAA0046284.1 self-incompatibility protein 1 [Cucumis melo var. makuwa]3.8e-3970.09Show/hide
Query:  DELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQ
        +ELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQ
Subjt:  DELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQ

Query:  HSETSITCSPWIKNALE
        HSETSITC PW KNA E
Subjt:  HSETSITCSPWIKNALE
TrEMBL top hitse value%identityAlignment
A0A5A7TR91 S-protein homolog4.6e-1470.77Show/hide
Query:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSL
        M LLLPI L A DELISLLPETTVTI+NEVGGPLLGIH R KQ    V+++ SD+SYSF FRP++
Subjt:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSL
A0A5A7TT98 S-protein homolog1.9e-3970.09Show/hide
Query:  DELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQ
        +ELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQ
Subjt:  DELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQ

Query:  HSETSITCSPWIKNALE
        HSETSITC PW KNA E
Subjt:  HSETSITCSPWIKNALE
A0A5A7TXE8 S-protein homolog7.5e-4166.67Show/hide
Query:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNC
        M LLLPI L ATDELISLLPETTV I+NEVGGPLLGIHCRSKQ    V+++  D+SYSF F P++   +         +  PHYFTIYDFKRD KTCTNC
Subjt:  MLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNC

Query:  KWLVYASGPCLQHSETSITCSPWIKNALE
        +WL+YASGPCLQHS+TS+TC PW KNA E
Subjt:  KWLVYASGPCLQHSETSITCSPWIKNALE
B0F817 S-protein homolog1.2e-4671.94Show/hide
Query:  MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDF
        M SSLAL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +         +  PHYFTIYDF
Subjt:  MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDF

Query:  KRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
        KRD KTCTNC+WLVYASGPCLQHSETSITC PW KNA E
Subjt:  KRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
B0F818 S-protein homolog6.6e-4571.11Show/hide
Query:  LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDA
        +AL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD+SYSF FRP++   +         +  PHYFTIYDFKRD 
Subjt:  LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDA

Query:  KTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
        KTCTNC+WLVYASGPCLQHSETSITC PW KNA E
Subjt:  KTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE
SwissProt top hitse value%identityAlignment
O23020 S-protein homolog 51.0e-1035.64Show/hide
Query:  TTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS--------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSP
        T VT+ N +GGP L IHC+SKQ    +H++   + Y F F+P+L   +         S    F IYD +RD   C +C+W +   GPC    +    C P
Subjt:  TTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS--------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSP

Query:  W
        W
Subjt:  W
Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family7.3e-1235.64Show/hide
Query:  TTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS--------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSP
        T VT+ N +GGP L IHC+SKQ    +H++   + Y F F+P+L   +         S    F IYD +RD   C +C+W +   GPC    +    C P
Subjt:  TTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMDS--------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSP

Query:  W
        W
Subjt:  W

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATGAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTAT
CAACGAGGTGGGTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCCTTGGAA
TGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAA
CACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATGAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTAT
CAACGAGGTGGGTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCCTTGGAA
TGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAA
CACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA
Protein sequenceShow/hide protein sequence
MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQTVHIIESDRSYSFTFRPSLGMDSRSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQ
HSETSITCSPWIKNALE