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Clc06G08050 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08050
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr06:8950773..8951260
RNA-Seq ExpressionClc06G08050
SyntenyClc06G08050
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61530.1 hypothetical protein Csa_006387 [Cucumis sativus]2.6e-6076.26Show/hide
Query:  MGSFSTFVLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIY
        M SFSTF L L IS+ FA++FTI+GKPFQSPP+TVNITNALK  NNQLT+HCKSGDDDLGVHQL HL SYAF FRPNFWGSTLFYC F W G +HYF+IY
Subjt:  MGSFSTFVLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIY

Query:  KDSRDRTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
        +D RDR  CN+TLCLWIVGE+G+CMF+Y T  YDICYTW
Subjt:  KDSRDRTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW

XP_008460739.1 PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo]1.6e-4978.38Show/hide
Query:  ITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVGEEGICMFNYGTKK
        +TVNITN + G NNQLTVHCKSGDDDLGVH+LPHL+SY FTFRPNFWGSTLFYC FQW  W HYFDIYKDSRD   CN+TLCLWI+ E+GICMFNY TK 
Subjt:  ITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVGEEGICMFNYGTKK

Query:  YDICYTW-LAK
        YD CY W LAK
Subjt:  YDICYTW-LAK

XP_008465559.1 PREDICTED: pumilio homolog 15-like, partial [Cucumis melo]1.9e-5076.42Show/hide
Query:  LFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVG
        LFTI+GKPFQ+P +TVNITNAL    +QLTVHCKSGDDDLG+HQL  L  YAFTFRPNF G+TLFYCTFQWPGW+H FDIYKDSRDR  CN  LCLWIVG
Subjt:  LFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVG

Query:  EEGICMFNYGTKKYDICYTWLAK
        E+G+CMF+Y TKKYD CYTW+ K
Subjt:  EEGICMFNYGTKKYDICYTWLAK

XP_022975612.1 S-protein homolog 3-like, partial [Cucurbita maxima]2.1e-4173.21Show/hide
Query:  ISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNE
        +S+FF +LF TI    F+ PPITVNITN L+  +NQLTVHCKSGDDDLG+HQLP+L  YAFTFRPNFWGST FYCTFQWPG++ YFDIYKD RDR  CN+
Subjt:  ISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNE

Query:  TLCLWIVGEEGI
        TLCLWIVG++GI
Subjt:  TLCLWIVGEEGI

XP_023522352.1 S-protein homolog 5-like, partial [Cucurbita pepo subsp. pepo]1.6e-4168.85Show/hide
Query:  MGSFSTFVLCLLISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDI
        M SFST    LL+S+FF +LF TI G  F+ PP+TVNITN LK  +NQL V CKS DDDL +HQLP L  YAFTF+PNFWGST FYCTF+W G++HYFDI
Subjt:  MGSFSTFVLCLLISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDI

Query:  YKDSRDRTHCNETLCLWIVGEE
        YKD+RDRT CN TLCLWIVGE+
Subjt:  YKDSRDRTHCNETLCLWIVGEE

TrEMBL top hitse value%identityAlignment
A0A0A0LI28 S-protein homolog1.2e-6076.26Show/hide
Query:  MGSFSTFVLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIY
        M SFSTF L L IS+ FA++FTI+GKPFQSPP+TVNITNALK  NNQLT+HCKSGDDDLGVHQL HL SYAF FRPNFWGSTLFYC F W G +HYF+IY
Subjt:  MGSFSTFVLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIY

Query:  KDSRDRTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
        +D RDR  CN+TLCLWIVGE+G+CMF+Y T  YDICYTW
Subjt:  KDSRDRTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW

A0A1S3CDK4 S-protein homolog7.6e-5078.38Show/hide
Query:  ITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVGEEGICMFNYGTKK
        +TVNITN + G NNQLTVHCKSGDDDLGVH+LPHL+SY FTFRPNFWGSTLFYC FQW  W HYFDIYKDSRD   CN+TLCLWI+ E+GICMFNY TK 
Subjt:  ITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVGEEGICMFNYGTKK

Query:  YDICYTW-LAK
        YD CY W LAK
Subjt:  YDICYTW-LAK

A0A1S3CP53 S-protein homolog9.0e-5176.42Show/hide
Query:  LFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVG
        LFTI+GKPFQ+P +TVNITNAL    +QLTVHCKSGDDDLG+HQL  L  YAFTFRPNF G+TLFYCTFQWPGW+H FDIYKDSRDR  CN  LCLWIVG
Subjt:  LFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNETLCLWIVG

Query:  EEGICMFNYGTKKYDICYTWLAK
        E+G+CMF+Y TKKYD CYTW+ K
Subjt:  EEGICMFNYGTKKYDICYTWLAK

A0A6J1EZJ3 S-protein homolog1.3e-4173.64Show/hide
Query:  ISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNE
        +S+FF +LF TI G  F+ PPITVN TN LK  +NQLT+HCKSGDDDLG+HQLP L  YAFTFRPNFWGST FYCTFQWPG++ YFDIYKD+RDR  CN+
Subjt:  ISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNE

Query:  TLCLWIVGEE
        TLCLWIVGE+
Subjt:  TLCLWIVGEE

A0A6J1IDI1 S-protein homolog9.9e-4273.21Show/hide
Query:  ISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNE
        +S+FF +LF TI    F+ PPITVNITN L+  +NQLTVHCKSGDDDLG+HQLP+L  YAFTFRPNFWGST FYCTFQWPG++ YFDIYKD RDR  CN+
Subjt:  ISVFFASLF-TIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCNE

Query:  TLCLWIVGEEGI
        TLCLWIVG++GI
Subjt:  TLCLWIVGEEGI

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 22.9e-2245.3Show/hide
Query:  FQSPPITVNITNALKGQNNQLTV--HCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDR---THCNETLCLWIVGEEG
        F +   TV I N L    NQLT+  HCKS DDDLG   L    S++F+F   F+G TL++C+F WP  +H FDIYKD RD      C    C+W +   G
Subjt:  FQSPPITVNITNALKGQNNQLTV--HCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDR---THCNETLCLWIVGEEG

Query:  ICMFNYGTKKYDICYTW
         C FN  TK++D+CY W
Subjt:  ICMFNYGTKKYDICYTW

F4JZG1 S-protein homolog 41.5e-1839.26Show/hide
Query:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFW-GSTLFYCTFQWPGWTHYFDIYKDSRD-
        V+ LLI + F+ +       + +    V ITN L G  + L +HCKS DDDLG+  L    S++F FRP+   G TLF+C F WPG + +F+IY D RD 
Subjt:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFW-GSTLFYCTFQWPGWTHYFDIYKDSRD-

Query:  -RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
         R       C+W +G+ G C F+     ++ICY W
Subjt:  -RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW

O23020 S-protein homolog 59.6e-1837.12Show/hide
Query:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRT
        ++C    + F S +   G P       V +TN + G    LT+HCKS  DDLG+H +P    Y F F+PN W STLF+C+FQW      FDIY   RD+ 
Subjt:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRT

Query:  HCNETLCLWIVGEEGICMFNYGTKKYDICYTW
         C++  C W +  +G C      K    C+ W
Subjt:  HCNETLCLWIVGEEGICMFNYGTKKYDICYTW

P0DN93 S-protein homolog 292.8e-1735.29Show/hide
Query:  STFVLCLLISVFFASLFTIQG-KPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDS
        S+ +  +L  + F  + +  G  PF    +TV  TN +  Q   LT+ C+S DDDLG H L H  ++ + FRP+++ +TLF C F W     +FD Y+  
Subjt:  STFVLCLLISVFFASLFTIQG-KPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDS

Query:  RDRTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
        RD+ HC    C W +  +  C+     KK+D CY W
Subjt:  RDRTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW

Q9FMQ4 S-protein homolog 33.2e-2141.79Show/hide
Query:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRD--
        V+ LLI + F+ + T     + +  + V ITN L G    L +HCKS DDDLG+  L    S++F FR +  G+TLFYC F WPG +  FDIY D RD  
Subjt:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRD--

Query:  RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
        R+H +   C+W +  +G CMF+     ++ICY W
Subjt:  RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW

Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family6.8e-1937.12Show/hide
Query:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRT
        ++C    + F S +   G P       V +TN + G    LT+HCKS  DDLG+H +P    Y F F+PN W STLF+C+FQW      FDIY   RD+ 
Subjt:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRT

Query:  HCNETLCLWIVGEEGICMFNYGTKKYDICYTW
         C++  C W +  +G C      K    C+ W
Subjt:  HCNETLCLWIVGEEGICMFNYGTKKYDICYTW

AT3G16970.1 Plant self-incompatibility protein S1 family2.0e-1836.03Show/hide
Query:  LCLLISVFFASLFTIQGKP---FQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRD
        +C+ +++      +I   P   F +P  TV I N L G +  L  HCKS +DDLG   +    +++F FRP+ +G TLF+C F W    H+FDIYK SRD
Subjt:  LCLLISVFFASLFTIQGKP---FQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRD

Query:  RTHCNE--TLCLWIVGEEGICMFNYGTKKYDICYTW
        R         C W + ++G C  N  +  +D+C  W
Subjt:  RTHCNE--TLCLWIVGEEGICMFNYGTKKYDICYTW

AT4G16195.1 Plant self-incompatibility protein S1 family2.1e-2345.3Show/hide
Query:  FQSPPITVNITNALKGQNNQLTV--HCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDR---THCNETLCLWIVGEEG
        F +   TV I N L    NQLT+  HCKS DDDLG   L    S++F+F   F+G TL++C+F WP  +H FDIYKD RD      C    C+W +   G
Subjt:  FQSPPITVNITNALKGQNNQLTV--HCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDR---THCNETLCLWIVGEEG

Query:  ICMFNYGTKKYDICYTW
         C FN  TK++D+CY W
Subjt:  ICMFNYGTKKYDICYTW

AT5G12060.1 Plant self-incompatibility protein S1 family2.3e-2241.79Show/hide
Query:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRD--
        V+ LLI + F+ + T     + +  + V ITN L G    L +HCKS DDDLG+  L    S++F FR +  G+TLFYC F WPG +  FDIY D RD  
Subjt:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRD--

Query:  RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
        R+H +   C+W +  +G CMF+     ++ICY W
Subjt:  RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW

AT5G12070.1 Plant self-incompatibility protein S1 family1.1e-1939.26Show/hide
Query:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFW-GSTLFYCTFQWPGWTHYFDIYKDSRD-
        V+ LLI + F+ +       + +    V ITN L G  + L +HCKS DDDLG+  L    S++F FRP+   G TLF+C F WPG + +F+IY D RD 
Subjt:  VLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFW-GSTLFYCTFQWPGWTHYFDIYKDSRD-

Query:  -RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW
         R       C+W +G+ G C F+     ++ICY W
Subjt:  -RTHCNETLCLWIVGEEGICMFNYGTKKYDICYTW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCGTTTTCAACATTTGTACTATGTCTTTTGATATCGGTGTTTTTCGCTAGCCTATTCACCATTCAAGGAAAACCCTTCCAATCCCCACCAATTACAGTTAACAT
CACAAATGCTCTAAAAGGTCAGAATAATCAACTCACTGTTCACTGCAAATCTGGCGATGATGACTTGGGAGTCCACCAACTCCCACATTTGATTAGTTACGCCTTCACTT
TTCGACCAAACTTTTGGGGTTCAACCTTGTTTTATTGTACCTTTCAATGGCCTGGTTGGACACATTACTTCGATATCTACAAGGATTCAAGAGATAGAACGCATTGCAAT
GAAACTTTGTGTTTGTGGATTGTGGGTGAAGAAGGTATCTGCATGTTCAACTATGGCACCAAAAAGTATGATATTTGCTATACGTGGTTGGCTAAATGA
mRNA sequenceShow/hide mRNA sequence
TTTTAATTCCGTGTACTGAACGAGACCTAAGCCTCTCTTTCTCTTACTATTTCGACAAAATGGGTTCGTTTTCAACATTTGTACTATGTCTTTTGATATCGGTGTTTTTC
GCTAGCCTATTCACCATTCAAGGAAAACCCTTCCAATCCCCACCAATTACAGTTAACATCACAAATGCTCTAAAAGGTCAGAATAATCAACTCACTGTTCACTGCAAATC
TGGCGATGATGACTTGGGAGTCCACCAACTCCCACATTTGATTAGTTACGCCTTCACTTTTCGACCAAACTTTTGGGGTTCAACCTTGTTTTATTGTACCTTTCAATGGC
CTGGTTGGACACATTACTTCGATATCTACAAGGATTCAAGAGATAGAACGCATTGCAATGAAACTTTGTGTTTGTGGATTGTGGGTGAAGAAGGTATCTGCATGTTCAAC
TATGGCACCAAAAAGTATGATATTTGCTATACGTGGTTGGCTAAATGA
Protein sequenceShow/hide protein sequence
MGSFSTFVLCLLISVFFASLFTIQGKPFQSPPITVNITNALKGQNNQLTVHCKSGDDDLGVHQLPHLISYAFTFRPNFWGSTLFYCTFQWPGWTHYFDIYKDSRDRTHCN
ETLCLWIVGEEGICMFNYGTKKYDICYTWLAK