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Clc06G08055 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08055
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr06:8959311..8959712
RNA-Seq ExpressionClc06G08055
SyntenyClc06G08055
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059530.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]3.0e-1751.43Show/hide
Query:  SLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVG
        +LFT EGKPFQ+PLV VNITNAL  K +LTVHCKSADDD G HQL PL                                  D++DRD CN+ LCLWIVG
Subjt:  SLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVG

Query:  EQGIC
        EQG+C
Subjt:  EQGIC

KGN61530.1 hypothetical protein Csa_006387 [Cucumis sativus]1.3e-2348.8Show/hide
Query:  VFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLC
        + F ++FTIEGKPFQSP V VNITNALK    +LT+HCKS DDD G HQL  L                                  D +DR  CN+ LC
Subjt:  VFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLC

Query:  LWIVGEQGICMFNNGTKKYDICYTW
        LWIVGEQG+CMF+  T  YDICYTW
Subjt:  LWIVGEQGICMFNNGTKKYDICYTW

XP_008460739.1 PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo]5.3e-1441.12Show/hide
Query:  VNVNITNALKG---KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKK
        + VNITN + G   +LTVHCKS DDD G H+LP L                                  D++D   CN+ LCLWI+ E+GICMFN  TK 
Subjt:  VNVNITNALKG---KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKK

Query:  YDICYTW
        YD CY W
Subjt:  YDICYTW

XP_008465559.1 PREDICTED: pumilio homolog 15-like, partial [Cucumis melo]1.7e-2554.1Show/hide
Query:  LFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGE
        LFTIEGKPFQ+PLV VNITNAL  K +LTVHCKS DDD G HQL PL                                  D++DRD CN  LCLWIVGE
Subjt:  LFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGE

Query:  QGICMFNNGTKKYDICYTWLVK
        QG+CMF+  TKKYD CYTW+ K
Subjt:  QGICMFNNGTKKYDICYTWLVK

XP_022138779.1 S-protein homolog 5 [Momordica charantia]2.8e-1544.04Show/hide
Query:  SPLVNVNITNALKG--KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGT
        S   +VNITN L+   +LTVHCKS DDD GFHQLPPL                                    +D D C   LCLWIVGE+G+C++N+ T
Subjt:  SPLVNVNITNALKG--KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGT

Query:  KKYDICYTW
         KYDICYTW
Subjt:  KKYDICYTW

TrEMBL top hitse value%identityAlignment
A0A0A0LI28 S-protein homolog6.1e-2448.8Show/hide
Query:  VFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLC
        + F ++FTIEGKPFQSP V VNITNALK    +LT+HCKS DDD G HQL  L                                  D +DR  CN+ LC
Subjt:  VFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLC

Query:  LWIVGEQGICMFNNGTKKYDICYTW
        LWIVGEQG+CMF+  T  YDICYTW
Subjt:  LWIVGEQGICMFNNGTKKYDICYTW

A0A1S3CDK4 S-protein homolog2.6e-1441.12Show/hide
Query:  VNVNITNALKG---KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKK
        + VNITN + G   +LTVHCKS DDD G H+LP L                                  D++D   CN+ LCLWI+ E+GICMFN  TK 
Subjt:  VNVNITNALKG---KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGTKK

Query:  YDICYTW
        YD CY W
Subjt:  YDICYTW

A0A1S3CP53 S-protein homolog8.5e-2654.1Show/hide
Query:  LFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGE
        LFTIEGKPFQ+PLV VNITNAL  K +LTVHCKS DDD G HQL PL                                  D++DRD CN  LCLWIVGE
Subjt:  LFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGE

Query:  QGICMFNNGTKKYDICYTWLVK
        QG+CMF+  TKKYD CYTW+ K
Subjt:  QGICMFNNGTKKYDICYTWLVK

A0A5A7UWN1 S-protein homolog1.4e-1751.43Show/hide
Query:  SLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVG
        +LFT EGKPFQ+PLV VNITNAL  K +LTVHCKSADDD G HQL PL                                  D++DRD CN+ LCLWIVG
Subjt:  SLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVG

Query:  EQGIC
        EQG+C
Subjt:  EQGIC

A0A6J1CB24 S-protein homolog1.4e-1544.04Show/hide
Query:  SPLVNVNITNALKG--KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGT
        S   +VNITN L+   +LTVHCKS DDD GFHQLPPL                                    +D D C   LCLWIVGE+G+C++N+ T
Subjt:  SPLVNVNITNALKG--KLTVHCKSADDDFGFHQLPPL----------------------------------DAKDRDCCNEPLCLWIVGEQGICMFNNGT

Query:  KKYDICYTW
         KYDICYTW
Subjt:  KKYDICYTW

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 24.2e-0628.04Show/hide
Query:  VNITNALKGKLTV--HCKSADDDFGFHQLPP-------------------------------------LDAKDRDCCNEPLCLWIVGEQGICMFNNGTKK
        V I N L  +LT+  HCKS DDD G   L P                                      D+   + C    C+W +   G C FN+ TK+
Subjt:  VNITNALKGKLTV--HCKSADDDFGFHQLPP-------------------------------------LDAKDRDCCNEPLCLWIVGEQGICMFNNGTKK

Query:  YDICYTW
        +D+CY W
Subjt:  YDICYTW

Q9FMQ4 S-protein homolog 33.6e-0531.19Show/hide
Query:  VNITNALKGKLT--VHCKSADDDFGFHQLPP--------------------------------LDAKDRD-------CCNEPLCLWIVGEQGICMFNNGT
        V ITN L   LT  +HCKSADDD G   L P                                +   DRD       C N   C+W +  QG CMF+   
Subjt:  VNITNALKGKLT--VHCKSADDDFGFHQLPP--------------------------------LDAKDRD-------CCNEPLCLWIVGEQGICMFNNGT

Query:  KKYDICYTW
          ++ICY W
Subjt:  KKYDICYTW

Arabidopsis top hitse value%identityAlignment
AT4G16195.1 Plant self-incompatibility protein S1 family3.0e-0728.04Show/hide
Query:  VNITNALKGKLTV--HCKSADDDFGFHQLPP-------------------------------------LDAKDRDCCNEPLCLWIVGEQGICMFNNGTKK
        V I N L  +LT+  HCKS DDD G   L P                                      D+   + C    C+W +   G C FN+ TK+
Subjt:  VNITNALKGKLTV--HCKSADDDFGFHQLPP-------------------------------------LDAKDRDCCNEPLCLWIVGEQGICMFNNGTKK

Query:  YDICYTW
        +D+CY W
Subjt:  YDICYTW

AT5G06020.1 Plant self-incompatibility protein S1 family4.0e-0442Show/hide
Query:  MVFFT--SLFTIEGKPF--QSPLVNVNITNALKGKLTVHCKSADDDFGFH
        M+F T    F  +G+PF  + PL  + + N     L +HCKS DDD GFH
Subjt:  MVFFT--SLFTIEGKPF--QSPLVNVNITNALKGKLTVHCKSADDDFGFH

AT5G06030.1 Plant self-incompatibility protein S1 family6.9e-0450Show/hide
Query:  KPFQSPLVNVNITNALKGKLTVHCKSADDDFGFHQL
        +PF+  L  V I N     L +HCKS DDD GFH L
Subjt:  KPFQSPLVNVNITNALKGKLTVHCKSADDDFGFHQL

AT5G12060.1 Plant self-incompatibility protein S1 family2.5e-0631.19Show/hide
Query:  VNITNALKGKLT--VHCKSADDDFGFHQLPP--------------------------------LDAKDRD-------CCNEPLCLWIVGEQGICMFNNGT
        V ITN L   LT  +HCKSADDD G   L P                                +   DRD       C N   C+W +  QG CMF+   
Subjt:  VNITNALKGKLT--VHCKSADDDFGFHQLPP--------------------------------LDAKDRD-------CCNEPLCLWIVGEQGICMFNNGT

Query:  KKYDICYTW
          ++ICY W
Subjt:  KKYDICYTW

AT5G12070.1 Plant self-incompatibility protein S1 family8.1e-0528.04Show/hide
Query:  VNITNAL--KGKLTVHCKSADDDFGFHQLPP---------------------------------LDAKDRDCCNEPL----CLWIVGEQGICMFNNGTKK
        V ITN L     L +HCKSADDD G   L P                                 +   DRD     +    C+W +G+ G C F+     
Subjt:  VNITNAL--KGKLTVHCKSADDDFGFHQLPP---------------------------------LDAKDRDCCNEPL----CLWIVGEQGICMFNNGTKK

Query:  YDICYTW
        ++ICY W
Subjt:  YDICYTW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAA
ATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTTTGTGGATTGTGGGTGAACAAGGCATCT
GTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAA
ATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTTTGTGGATTGTGGGTGAACAAGGCATCT
GTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA
Protein sequenceShow/hide protein sequence
MVFFTSLFTIEGKPFQSPLVNVNITNALKGKLTVHCKSADDDFGFHQLPPLDAKDRDCCNEPLCLWIVGEQGICMFNNGTKKYDICYTWLVK