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Clc06G08060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr06:8974003..8980267
RNA-Seq ExpressionClc06G08060
SyntenyClc06G08060
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61530.1 hypothetical protein Csa_006387 [Cucumis sativus]1.9e-4974.05Show/hide
Query:  MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKG-NYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDI
        M SFST  LSL ISL FAT+FTIEGKPFQSPPVTV ITN LK  N QLT+HCKSGDDDLGVHQLS LASY+F FRPNFWG TLF+C F W GSS HYF+I
Subjt:  MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKG-NYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDI

Query:  YKDIRDRQRCNDTLCLWNVDEHDICLFNYST
        Y+D+RDR +CNDTLCLW V E  +C+F+Y T
Subjt:  YKDIRDRQRCNDTLCLWNVDEHDICLFNYST

XP_008465559.1 PREDICTED: pumilio homolog 15-like, partial [Cucumis melo]4.4e-3871.43Show/hide
Query:  LFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCNDTLCLWNVD
        LFTIEGKPFQ+P VTV ITN L    QLTVHCKSGDDDLG+HQL PL  Y+FTFRPNF G TLF+C FQWPG S H FDIYKD RDR RCN  LCLW V 
Subjt:  LFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCNDTLCLWNVD

Query:  EHDICLFNYSTK
        E  +C+F+Y TK
Subjt:  EHDICLFNYSTK

XP_022933325.1 S-protein homolog 5-like, partial [Cucurbita moschata]7.7e-3567.89Show/hide
Query:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND
        +SLFF TLF TI+G  F+ PP+TV ITN LK + QLT+HCKSGDDDLG+HQL  L  Y+FTFRPNFWG T F+C FQW G S  YFDIYKD RDR +CN 
Subjt:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND

Query:  TLCLWNVDE
        TLCLW V E
Subjt:  TLCLWNVDE

XP_022933359.1 S-protein homolog 5-like, partial [Cucurbita moschata]2.7e-3567.89Show/hide
Query:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND
        +SLFF TLF TI+G  F+ PP+TV  TN LK + QLT+HCKSGDDDLG+HQL  L  Y+FTFRPNFWG T F+C FQWPG S  YFDIYKD RDR +CN 
Subjt:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND

Query:  TLCLWNVDE
        TLCLW V E
Subjt:  TLCLWNVDE

XP_023522352.1 S-protein homolog 5-like, partial [Cucurbita pepo subsp. pepo]2.2e-3765.29Show/hide
Query:  MGSFSTLALSLIISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDI
        M SFSTLA +L++SLFF TLF TI+G  F+ PP+TV ITN LK + QL V CKS DDDL +HQL PL  Y+FTF+PNFWG T F+C F+W G S HYFDI
Subjt:  MGSFSTLALSLIISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDI

Query:  YKDIRDRQRCNDTLCLWNVDE
        YKD RDR +CN+TLCLW V E
Subjt:  YKDIRDRQRCNDTLCLWNVDE

TrEMBL top hitse value%identityAlignment
A0A0A0LI28 S-protein homolog9.2e-5074.05Show/hide
Query:  MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKG-NYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDI
        M SFST  LSL ISL FAT+FTIEGKPFQSPPVTV ITN LK  N QLT+HCKSGDDDLGVHQLS LASY+F FRPNFWG TLF+C F W GSS HYF+I
Subjt:  MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKG-NYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDI

Query:  YKDIRDRQRCNDTLCLWNVDEHDICLFNYST
        Y+D+RDR +CNDTLCLW V E  +C+F+Y T
Subjt:  YKDIRDRQRCNDTLCLWNVDEHDICLFNYST

A0A1S3CP53 S-protein homolog2.1e-3871.43Show/hide
Query:  LFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCNDTLCLWNVD
        LFTIEGKPFQ+P VTV ITN L    QLTVHCKSGDDDLG+HQL PL  Y+FTFRPNF G TLF+C FQWPG S H FDIYKD RDR RCN  LCLW V 
Subjt:  LFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCNDTLCLWNVD

Query:  EHDICLFNYSTK
        E  +C+F+Y TK
Subjt:  EHDICLFNYSTK

A0A6J1EZJ3 S-protein homolog1.3e-3567.89Show/hide
Query:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND
        +SLFF TLF TI+G  F+ PP+TV  TN LK + QLT+HCKSGDDDLG+HQL  L  Y+FTFRPNFWG T F+C FQWPG S  YFDIYKD RDR +CN 
Subjt:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND

Query:  TLCLWNVDE
        TLCLW V E
Subjt:  TLCLWNVDE

A0A6J1F4K2 S-protein homolog3.7e-3567.89Show/hide
Query:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND
        +SLFF TLF TI+G  F+ PP+TV ITN LK + QLT+HCKSGDDDLG+HQL  L  Y+FTFRPNFWG T F+C FQW G S  YFDIYKD RDR +CN 
Subjt:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND

Query:  TLCLWNVDE
        TLCLW V E
Subjt:  TLCLWNVDE

A0A6J1IDA7 S-protein homolog8.3e-3566.07Show/hide
Query:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND
        +SL F TLF TI+G  F+ PP+TV ITN L+ + QLTVHCKSGDDDLG+HQL  L  Y+FTFRPNFWG T F+C FQWPG S  YFDIYKD RDR +CN 
Subjt:  ISLFFATLF-TIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCND

Query:  TLCLWNVDEHDI
        TLCLW V +  I
Subjt:  TLCLWNVDEHDI

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 23.9e-2144.54Show/hide
Query:  FQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDR---QRCNDTLCLWNVDEHDIC
        F +   TV+I N L     L  HCKS DDDLG   L P  S+SF+F   F+GRTL+FC F WP  S H FDIYKD RD     +C    C+W +  +  C
Subjt:  FQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDR---QRCNDTLCLWNVDEHDIC

Query:  LFNYSTKMVGCLLPHGKML
         FN  TK      P  K L
Subjt:  LFNYSTKMVGCLLPHGKML

F4JZG1 S-protein homolog 45.4e-1538.71Show/hide
Query:  LALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFW-GRTLFFCGFQWPGSSLHYFDIYKDIRD
        + + L+I + F+ +       + +    V ITN L     L +HCKS DDDLG+  L+P  S+SF FRP+   G TLFFC F WPG S  +F+IY D RD
Subjt:  LALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFW-GRTLFFCGFQWPGSSLHYFDIYKDIRD

Query:  --RQRCNDTLCLWNVDEHDICLFN
          R       C+W++ ++  C F+
Subjt:  --RQRCNDTLCLWNVDEHDICLFN

O23020 S-protein homolog 53.2e-1539.52Show/hide
Query:  IISLFFATLFTIEGKPFQSPP----VTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ
        I+  FF  LF   G  +   P     TV     L G   LT+HCKS  DDLG+H +     Y F F+PN W  TLFFC FQW  S    FDIY   RD+ 
Subjt:  IISLFFATLFTIEGKPFQSPP----VTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ

Query:  RCNDTLCLWNVDEHDICLFNYSTK
         C+D  C W +     C      K
Subjt:  RCNDTLCLWNVDEHDICLFNYSTK

Q3E9W6 S-protein homolog 201.0e-1338.46Show/hide
Query:  ALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ
        A  +I+S+ F  +F   G       V V I N +  N QL +HCKS D DLG   L+P   + F    +FWG TLFFC F+W   S  +FDI    RDR 
Subjt:  ALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ

Query:  RCNDTLCLWNVDEHDIC
         C +  C+W++     C
Subjt:  RCNDTLCLWNVDEHDIC

Q9FMQ4 S-protein homolog 33.4e-1746.39Show/hide
Query:  VKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRD--RQRCNDTLCLWNVDEHDICLFNYS
        V+ITN L     L +HCKS DDDLG+  L+P  S+SF FR +  G TLF+C F WPG S   FDIY D RD  R   +   C+W++     C+F+ S
Subjt:  VKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRD--RQRCNDTLCLWNVDEHDICLFNYS

Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family2.2e-1639.52Show/hide
Query:  IISLFFATLFTIEGKPFQSPP----VTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ
        I+  FF  LF   G  +   P     TV     L G   LT+HCKS  DDLG+H +     Y F F+PN W  TLFFC FQW  S    FDIY   RD+ 
Subjt:  IISLFFATLFTIEGKPFQSPP----VTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ

Query:  RCNDTLCLWNVDEHDICLFNYSTK
         C+D  C W +     C      K
Subjt:  RCNDTLCLWNVDEHDICLFNYSTK

AT3G16970.1 Plant self-incompatibility protein S1 family2.8e-1942.48Show/hide
Query:  FQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ--RCNDTLCLWNVDEHDICL
        F +P  TV I N L G+  L  HCKS +DDLG   ++   ++SF FRP+ +G TLFFCGF W    LH+FDIYK  RDR+        C W + +   C 
Subjt:  FQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQ--RCNDTLCLWNVDEHDICL

Query:  FNYSTKMVGCLLP
         N ++ M    LP
Subjt:  FNYSTKMVGCLLP

AT3G17080.1 Plant self-incompatibility protein S1 family9.1e-1838.06Show/hide
Query:  MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIY
        MGS  T  L  ++ +F + + +           +V I N L G   L  HCKS +DDLG   L+P  S+SF F P+ +GRTLF+C F W G+  H FDIY
Subjt:  MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIY

Query:  KDIRDR--QRCNDTLCLWNVDEHDICLFNYSTKM
        K  RD+  Q      C W + ++  C F   T M
Subjt:  KDIRDR--QRCNDTLCLWNVDEHDICLFNYSTKM

AT4G16195.1 Plant self-incompatibility protein S1 family2.7e-2244.54Show/hide
Query:  FQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDR---QRCNDTLCLWNVDEHDIC
        F +   TV+I N L     L  HCKS DDDLG   L P  S+SF+F   F+GRTL+FC F WP  S H FDIYKD RD     +C    C+W +  +  C
Subjt:  FQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDR---QRCNDTLCLWNVDEHDIC

Query:  LFNYSTKMVGCLLPHGKML
         FN  TK      P  K L
Subjt:  LFNYSTKMVGCLLPHGKML

AT5G12060.1 Plant self-incompatibility protein S1 family2.4e-1846.39Show/hide
Query:  VKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRD--RQRCNDTLCLWNVDEHDICLFNYS
        V+ITN L     L +HCKS DDDLG+  L+P  S+SF FR +  G TLF+C F WPG S   FDIY D RD  R   +   C+W++     C+F+ S
Subjt:  VKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRD--RQRCNDTLCLWNVDEHDICLFNYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCATTTTCAACATTGGCACTATCCTTGATTATATCATTGTTTTTCGCTACCTTATTCACTATCGAAGGAAAACCCTTCCAATCCCCACCGGTTACAGTCAAGAT
AACAAATACTCTAAAAGGTAATTATCAACTCACTGTTCACTGCAAATCAGGAGATGATGACTTGGGAGTTCACCAGCTCTCACCTTTGGCTAGTTATAGCTTTACTTTTC
GACCAAACTTCTGGGGTAGAACCTTGTTTTTCTGTGGCTTCCAATGGCCTGGTTCATCGTTACATTACTTTGATATCTACAAGGATATAAGAGATAGACAACGATGTAAT
GATACTTTGTGTTTGTGGAATGTGGATGAACATGATATTTGTTTGTTCAACTATAGCACCAAAATGGTGGGATGTCTGCTGCCTCATGGGAAGATGTTGGGAATCACTTT
TCTGAAAAAGCCTTCTGTGCTTGAGCAAATTCATACTCTACAAGTAGTGAGCCGCACCATCTGTTTTGATTGTATAGTGCTGCCTTCATCAGGTCATCTCCCTACGACGT
GTGTGACATCCCAAATTTTCAGATATCTTTCACTGGATTCAGTGAACACCCTTCACTGGAGTCTCTTAGAATCCTCTATGATAAGAAAACTCCATTTTCTTAGTATAAGG
TCTCAAGCTCCCTTTGACACCAACGACTCTGAGACTCGCACCCTCTCCTATATGAAACGAAACACCATCAAGCGGAACCAAGGAGACATTGACAGTAGAAGCCTGCTTCC
TTTTGGCTTTGGCCGAAGATCTGGTAATGCGAACAAGGCCAACAACATCCTCTGCATCGGAACTGCTCTTAAAACCCCAAAGGAGTTATCATCAGAAGAAACAACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCATTTTCAACATTGGCACTATCCTTGATTATATCATTGTTTTTCGCTACCTTATTCACTATCGAAGGAAAACCCTTCCAATCCCCACCGGTTACAGTCAAGAT
AACAAATACTCTAAAAGGTAATTATCAACTCACTGTTCACTGCAAATCAGGAGATGATGACTTGGGAGTTCACCAGCTCTCACCTTTGGCTAGTTATAGCTTTACTTTTC
GACCAAACTTCTGGGGTAGAACCTTGTTTTTCTGTGGCTTCCAATGGCCTGGTTCATCGTTACATTACTTTGATATCTACAAGGATATAAGAGATAGACAACGATGTAAT
GATACTTTGTGTTTGTGGAATGTGGATGAACATGATATTTGTTTGTTCAACTATAGCACCAAAATGGTGGGATGTCTGCTGCCTCATGGGAAGATGTTGGGAATCACTTT
TCTGAAAAAGCCTTCTGTGCTTGAGCAAATTCATACTCTACAAGTAGTGAGCCGCACCATCTGTTTTGATTGTATAGTGCTGCCTTCATCAGGTCATCTCCCTACGACGT
GTGTGACATCCCAAATTTTCAGATATCTTTCACTGGATTCAGTGAACACCCTTCACTGGAGTCTCTTAGAATCCTCTATGATAAGAAAACTCCATTTTCTTAGTATAAGG
TCTCAAGCTCCCTTTGACACCAACGACTCTGAGACTCGCACCCTCTCCTATATGAAACGAAACACCATCAAGCGGAACCAAGGAGACATTGACAGTAGAAGCCTGCTTCC
TTTTGGCTTTGGCCGAAGATCTGGTAATGCGAACAAGGCCAACAACATCCTCTGCATCGGAACTGCTCTTAAAACCCCAAAGGAGTTATCATCAGAAGAAACAACCTAA
Protein sequenceShow/hide protein sequence
MGSFSTLALSLIISLFFATLFTIEGKPFQSPPVTVKITNTLKGNYQLTVHCKSGDDDLGVHQLSPLASYSFTFRPNFWGRTLFFCGFQWPGSSLHYFDIYKDIRDRQRCN
DTLCLWNVDEHDICLFNYSTKMVGCLLPHGKMLGITFLKKPSVLEQIHTLQVVSRTICFDCIVLPSSGHLPTTCVTSQIFRYLSLDSVNTLHWSLLESSMIRKLHFLSIR
SQAPFDTNDSETRTLSYMKRNTIKRNQGDIDSRSLLPFGFGRRSGNANKANNILCIGTALKTPKELSSEETT