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Clc06G08080 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08080
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich protein 5-like
Genome locationClcChr06:9032463..9034451
RNA-Seq ExpressionClc06G08080
SyntenyClc06G08080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460740.1 PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]7.9e-3775Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS
        MAK  ++ VAFVF I+N   R V  G SR+ EYQTLE+AA+P+A+PP  GGV DQK+IFGGVGGF GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGH 
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS

Query:  GFGGGVGGVGGMGGGVVPFP
        GFG GVGGVGG+GGGVVPFP
Subjt:  GFGGGVGGVGGMGGGVVPFP

XP_031736585.1 elastin-like isoform X1 [Cucumis sativus]7.4e-3577.19Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLG-GGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        MAK F+I + FVFLI+N   RNV G GG R+E+Y+TLE+AAAP+A+PPS GGV DQK+IFGGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG G GH
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLG-GGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  SGFGGGVGGVGGMG
         GFGGGVGGVGG+G
Subjt:  SGFGGGVGGVGGMG

XP_031736586.1 ctenidin-3-like isoform X2 [Cucumis sativus]1.5e-3576.99Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS
        MAK F+I + FVFLI+N   RNV  GG R+E+Y+TLE+AAAP+A+PPS GGV DQK+IFGGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG G GH 
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS

Query:  GFGGGVGGVGGMG
        GFGGGVGGVGG+G
Subjt:  GFGGGVGGVGGMG

XP_031736587.1 glycine-rich protein 5-like isoform X3 [Cucumis sativus]1.1e-3877.69Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLG-GGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        MAK F+I + FVFLI+N   RNV G GG R+E+Y+TLE+AAAP+A+PPS GGV DQK+IFGGVG FAGMGGYIGGLFPHLGGVGVIGKYGGIGGG G GH
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLG-GGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  SGFGGGVGGVGGMGGGVVPFP
         GFGGGVGGVGG+GGG+VPFP
Subjt:  SGFGGGVGGVGGMGGGVVPFP

XP_038906734.1 glycine-rich protein 5-like [Benincasa hispida]1.5e-4386.67Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS
        MAKIFI+ VAFVFL VNAG RNV  GGS+ E+YQTLEQAAAP+ADPPSS GV DQK+IFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH 
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS

Query:  GFGGGVGGVGGMGGGVVPFP
        GFGGGVGGVGG+GGG VPFP
Subjt:  GFGGGVGGVGGMGGGVVPFP

TrEMBL top hitse value%identityAlignment
A0A1S3CEA9 glycine-rich cell wall structural protein 1-like3.8e-3775Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS
        MAK  ++ VAFVF I+N   R V  G SR+ EYQTLE+AA+P+A+PP  GGV DQK+IFGGVGGF GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGH 
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS

Query:  GFGGGVGGVGGMGGGVVPFP
        GFG GVGGVGG+GGGVVPFP
Subjt:  GFGGGVGGVGGMGGGVVPFP

A0A5D3D259 Glycine-rich cell wall structural protein 1-like3.8e-3775Show/hide
Query:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS
        MAK  ++ VAFVF I+N   R V  G SR+ EYQTLE+AA+P+A+PP  GGV DQK+IFGGVGGF GMGGYIGGLFPHLGGVG IGKYGGIGGG GFGH 
Subjt:  MAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHS

Query:  GFGGGVGGVGGMGGGVVPFP
        GFG GVGGVGG+GGGVVPFP
Subjt:  GFGGGVGGVGGMGGGVVPFP

A0A6J1CDU6 WW domain-containing protein C660.063.5e-2259.69Show/hide
Query:  IFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKS-IFGGVGGFAGMGGYIGGLFPHL--GGVGVIGKYGGIGGGIGF---
        +F++  AFV L+V+A  R+V G    +++ QTLE A  P+ADPPSSGGV +QK  IFGGVGGFAGMGG++GGLFPHL  GGVG IGK+GGIGGG G    
Subjt:  IFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKS-IFGGVGGFAGMGGYIGGLFPHL--GGVGVIGKYGGIGGGIGF---

Query:  ---GHSGFGGGVGGVGGMGGGV---VPFP
           G  G GGG GGVGG  GGV   +PFP
Subjt:  ---GHSGFGGGVGGVGGMGGGV---VPFP

A0A6J1HL05 glycine-rich protein 5-like1.4e-3172.95Show/hide
Query:  MAKI--FIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFG
        MAKI   ++ V FV L+V+A  RNV GGGS + +   L+ A AP+A  PSS   VDQK+I+GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFG
Subjt:  MAKI--FIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFG

Query:  HSGFGGGVGGVGGMGGGVVPFP
        H GFGGGVGGVGG+GGGVVPFP
Subjt:  HSGFGGGVGGVGGMGGGVVPFP

A0A6J1KIQ3 glycine-rich protein 5-like1.8e-3172.65Show/hide
Query:  IFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFG
        + ++ V FV L+V+A  RNV GGGS + +   L+ A AP+A  PSS   VDQK+I+GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGH GFG
Subjt:  IFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFG

Query:  GGVGGVGGMGGGVVPFP
        GGVGGVGG+GGGVVPFP
Subjt:  GGVGGVGGMGGGVVPFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04660.1 glycine-rich protein2.4e-0746.97Show/hide
Query:  IIAVAFVFLIVNAGARNVLG----GGSREEEYQTLEQAAAPMAD--PPSSGGVVDQKSIFG--GVGGFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGG
        ++ V      V A AR V G    G +   +  T     A  AD  PP S G  D+K I G  GVGGFAG+GG   +GGL  P +GG+G IGKYGGIGG 
Subjt:  IIAVAFVFLIVNAGARNVLG----GGSREEEYQTLEQAAAPMAD--PPSSGGVVDQKSIFG--GVGGFAGMGGY--IGGL-FPHLGGVGVIGKYGGIGGG

Query:  IGFG--HS--------GFGGGVGGVGGMGGGV
         G G  HS        G GGGVGG+GG+GGGV
Subjt:  IGFG--HS--------GFGGGVGGVGGMGGGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGAGGGAAATGGCGAAAATTTTCATCATTGCTGTTGCGTTTGTTTTCTTAATCGTGAATGCGGGTGCCCGAAACGTTCTAGGCGGTGGCAGTAGGGAGGAGGA
GTACCAAACCCTAGAACAGGCAGCGGCACCCATGGCAGATCCGCCGAGCAGCGGTGGTGTTGTTGATCAGAAGAGCATCTTTGGTGGGGTTGGAGGTTTTGCAGGGATGG
GTGGCTACATTGGAGGGTTATTTCCACATCTTGGTGGGGTTGGCGTAATCGGCAAGTACGGCGGAATTGGTGGTGGCATTGGCTTCGGACACAGTGGCTTTGGAGGCGGA
GTTGGCGGCGTCGGTGGCATGGGTGGTGGAGTTGTGCCATTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGAGGGAAATGGCGAAAATTTTCATCATTGCTGTTGCGTTTGTTTTCTTAATCGTGAATGCGGGTGCCCGAAACGTTCTAGGCGGTGGCAGTAGGGAGGAGGA
GTACCAAACCCTAGAACAGGCAGCGGCACCCATGGCAGATCCGCCGAGCAGCGGTGGTGTTGTTGATCAGAAGAGCATCTTTGGTGGGGTTGGAGGTTTTGCAGGGATGG
GTGGCTACATTGGAGGGTTATTTCCACATCTTGGTGGGGTTGGCGTAATCGGCAAGTACGGCGGAATTGGTGGTGGCATTGGCTTCGGACACAGTGGCTTTGGAGGCGGA
GTTGGCGGCGTCGGTGGCATGGGTGGTGGAGTTGTGCCATTTCCTTGA
Protein sequenceShow/hide protein sequence
MAKREMAKIFIIAVAFVFLIVNAGARNVLGGGSREEEYQTLEQAAAPMADPPSSGGVVDQKSIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHSGFGGG
VGGVGGMGGGVVPFP