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Clc06G08360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPLASMODESMATA CALLOSE-BINDING PROTEIN 3
Genome locationClcChr06:9647774..9648148
RNA-Seq ExpressionClc06G08360
SyntenyClc06G08360
Gene Ontology termsGO:0009506 - plasmodesma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012946 - X8 domain
IPR044788 - Carbohydrate-binding X8 domain-containing protein, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033304.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa]2.0e-4586.44Show/hide
Query:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS
        MAT + SH  SF LF   FFLIGTSAVDGAYWCVARSDATYE+LQAA+DYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDF GS
Subjt:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS

Query:  ATIAQSDPSPSLSPSLCS
        ATIAQSDPS S SP L S
Subjt:  ATIAQSDPSPSLSPSLCS

KAE8651770.1 hypothetical protein Csa_006265 [Cucumis sativus]1.1e-4386.92Show/hide
Query:  MATLVSSH---SFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT
        MAT + SH    F  FFFL GTS VDGAYWCVARSDATYE+LQAALDYACATGA+CTPI+LNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT
Subjt:  MATLVSSH---SFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT

Query:  IAQSDPS
        IAQSDPS
Subjt:  IAQSDPS

XP_004138961.2 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus]1.1e-4386.92Show/hide
Query:  MATLVSSH---SFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT
        MAT + SH    F  FFFL GTS VDGAYWCVARSDATYE+LQAALDYACATGA+CTPI+LNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT
Subjt:  MATLVSSH---SFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT

Query:  IAQSDPS
        IAQSDPS
Subjt:  IAQSDPS

XP_008457240.1 PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo]2.3e-4488.99Show/hide
Query:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS
        MAT + SH  SF LF   FFLIGTSAVDGAYWCVARSDATYE+LQAA+DYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDF GS
Subjt:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS

Query:  ATIAQSDPS
        ATIAQSDPS
Subjt:  ATIAQSDPS

XP_038875835.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Benincasa hispida]1.2e-4897.12Show/hide
Query:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ
        MATLV SHSFLLFFFLIGTSAVDGAYWCVARSDA+YEALQAALDYACATGADC PILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ
Subjt:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ

Query:  SDPS
        SDPS
Subjt:  SDPS

TrEMBL top hitse value%identityAlignment
A0A0A0LND4 X8 domain-containing protein5.4e-4486.92Show/hide
Query:  MATLVSSH---SFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT
        MAT + SH    F  FFFL GTS VDGAYWCVARSDATYE+LQAALDYACATGA+CTPI+LNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT
Subjt:  MATLVSSH---SFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT

Query:  IAQSDPS
        IAQSDPS
Subjt:  IAQSDPS

A0A1S3C4M3 PLASMODESMATA CALLOSE-BINDING PROTEIN 31.1e-4488.99Show/hide
Query:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS
        MAT + SH  SF LF   FFLIGTSAVDGAYWCVARSDATYE+LQAA+DYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDF GS
Subjt:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS

Query:  ATIAQSDPS
        ATIAQSDPS
Subjt:  ATIAQSDPS

A0A5A7SQ29 PLASMODESMATA CALLOSE-BINDING PROTEIN 39.9e-4686.44Show/hide
Query:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS
        MAT + SH  SF LF   FFLIGTSAVDGAYWCVARSDATYE+LQAA+DYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDF GS
Subjt:  MATLVSSH--SFLLF---FFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGS

Query:  ATIAQSDPSPSLSPSLCS
        ATIAQSDPS S SP L S
Subjt:  ATIAQSDPSPSLSPSLCS

A0A6J1H812 PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like2.7e-4387.74Show/hide
Query:  MATLVSSHSF--LLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATI
        MATLV SHSF  LL  FL+ TSAVDGAYWCVARS+A+YEALQ ALDYACATGADCTP+L NGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATI
Subjt:  MATLVSSHSF--LLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATI

Query:  AQSDPS
        AQ+DPS
Subjt:  AQSDPS

A0A6J1KVB1 PLASMODESMATA CALLOSE-BINDING PROTEIN 33.5e-4386.79Show/hide
Query:  MATLVSSHSF--LLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATI
        MATLV SHSF  LL  FL+ TSAVDGAYWCVARS+A+YEALQ ALDYACATGADCTP+L NGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSAT+
Subjt:  MATLVSSHSF--LLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATI

Query:  AQSDPS
        AQ+DPS
Subjt:  AQSDPS

SwissProt top hitse value%identityAlignment
Q84V39 Major pollen allergen Ole e 104.2e-1751.9Show/hide
Query:  WCVARSDATYEALQAALDYACA-TGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS
        WCV +++AT   LQ+ +DY C+ +G DC PI  NG CF PNT++AHASYA NS++Q K      CDF+G+  I  SDPS
Subjt:  WCVARSDATYEALQAALDYACA-TGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS

Q9FNQ2 PLASMODESMATA CALLOSE-BINDING PROTEIN 13.8e-1849.04Show/hide
Query:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ
        MA LV S   LL   L G S+   A WCV ++  +   LQA LDYAC  GADC P      CF P+ +++H +YA NSFFQ+K  +PGSC+F G+AT   
Subjt:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ

Query:  SDPS
        SDPS
Subjt:  SDPS

Q9FZ86 PLASMODESMATA CALLOSE-BINDING PROTEIN 32.4e-2047.17Show/hide
Query:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPSPSLSP
        F+L   L+  +      WCV +   +   LQ  LDYAC  GADC PI   G CF PNT+++H SYA NSFFQ+K  + G+CDFAG+AT + SDPS +  P
Subjt:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPSPSLSP

Query:  SLCSFS
           S S
Subjt:  SLCSFS

Q9M069 Glucan endo-1,3-beta-glucosidase 71.8e-1545.78Show/hide
Query:  VDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS
        V  + WCV +  AT E LQA+LD+AC  G DC  I   G CF PN + +HA+YA N +FQ+    P  CDF+ +AT+   +PS
Subjt:  VDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS

Q9SD84 PLASMODESMATA CALLOSE-BINDING PROTEIN 27.1e-1745.26Show/hide
Query:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS
        +LL   + G ++   A WCV ++  +   LQ  LDYAC  GADC P    G CF P+ ++AH +YA NSFFQ+K  A  SC+F G+AT+  +DPS
Subjt:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS

Arabidopsis top hitse value%identityAlignment
AT1G18650.1 plasmodesmata callose-binding protein 31.7e-2147.17Show/hide
Query:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPSPSLSP
        F+L   L+  +      WCV +   +   LQ  LDYAC  GADC PI   G CF PNT+++H SYA NSFFQ+K  + G+CDFAG+AT + SDPS +  P
Subjt:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPSPSLSP

Query:  SLCSFS
           S S
Subjt:  SLCSFS

AT2G05790.1 O-Glycosyl hydrolases family 17 protein3.0e-1848.84Show/hide
Query:  TSAVDGAYWCVARSDATYEALQAALDYACAT-GADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDP
        + +++G  WCVA  DA  E LQ  LDYAC   GADC PI     C+ P+T++AHAS+AFNS++Q+K  A GSC F G+A +    P
Subjt:  TSAVDGAYWCVARSDATYEALQAALDYACAT-GADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDP

AT4G13600.1 Carbohydrate-binding X8 domain superfamily protein1.2e-3266.35Show/hide
Query:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ
        MA  + + SFLL      ++A+    WCVAR D T +ALQAALDYACA GADC PI  NGLCFLPNT+QAHASYAFNS+FQR AMAPGSC+FAG++TIA+
Subjt:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ

Query:  SDPS
        +DPS
Subjt:  SDPS

AT5G08000.1 glucan endo-1,3-beta-glucosidase-like protein 35.1e-1845.26Show/hide
Query:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS
        +LL   + G ++   A WCV ++  +   LQ  LDYAC  GADC P    G CF P+ ++AH +YA NSFFQ+K  A  SC+F G+AT+  +DPS
Subjt:  FLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPS

AT5G61130.1 plasmodesmata callose-binding protein 12.7e-1949.04Show/hide
Query:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ
        MA LV S   LL   L G S+   A WCV ++  +   LQA LDYAC  GADC P      CF P+ +++H +YA NSFFQ+K  +PGSC+F G+AT   
Subjt:  MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQ

Query:  SDPS
        SDPS
Subjt:  SDPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACACTTGTTTCCTCCCACTCCTTCCTTCTCTTCTTTTTCCTCATCGGAACCTCCGCCGTTGACGGCGCGTACTGGTGCGTGGCCCGTAGCGACGCCACCTACGA
AGCCCTCCAAGCCGCCCTTGACTACGCCTGCGCCACCGGCGCCGACTGTACTCCGATTCTGTTAAACGGACTCTGTTTCCTCCCCAACACCATCCAGGCCCACGCCTCCT
ACGCCTTCAACAGCTTCTTCCAGCGCAAAGCTATGGCTCCAGGCTCCTGTGACTTCGCCGGCTCCGCCACCATCGCCCAGAGCGACCCAAGTCCGTCCCTCTCTCCCTCA
CTCTGTTCCTTCTCTGTTTTTCTTTTGCGCTCAGAGTTTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACACTTGTTTCCTCCCACTCCTTCCTTCTCTTCTTTTTCCTCATCGGAACCTCCGCCGTTGACGGCGCGTACTGGTGCGTGGCCCGTAGCGACGCCACCTACGA
AGCCCTCCAAGCCGCCCTTGACTACGCCTGCGCCACCGGCGCCGACTGTACTCCGATTCTGTTAAACGGACTCTGTTTCCTCCCCAACACCATCCAGGCCCACGCCTCCT
ACGCCTTCAACAGCTTCTTCCAGCGCAAAGCTATGGCTCCAGGCTCCTGTGACTTCGCCGGCTCCGCCACCATCGCCCAGAGCGACCCAAGTCCGTCCCTCTCTCCCTCA
CTCTGTTCCTTCTCTGTTTTTCTTTTGCGCTCAGAGTTTAGCTGA
Protein sequenceShow/hide protein sequence
MATLVSSHSFLLFFFLIGTSAVDGAYWCVARSDATYEALQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPSPSLSPS
LCSFSVFLLRSEFS