CuGenDBv2

Gene ID	Clc06G08590
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II CP47 reaction center protein
Genome location	ClcChr06:10244027..10244682
RNA-Seq Expression	Clc06G08590
Synteny	Clc06G08590
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QXJ79888.1 NADH dehydrogenase subunit D [Gymnadenia crassinervis]

1.6e-16

65.67

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST
        MVTRYPR  TLQY+YA  WN+IK+GSIWI SDQYGII+   F + +LV  SR+N+N LCSFN+F ST
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST

RXI09986.1 hypothetical protein DVH24_037507 [Malus domestica]

1.1e-22

82.54

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNI
        MVTR+P RGTLQYLYA   N+IKNGS+WIGSDQYGIITPRPFY+ +LVD+SRHNSNNLCSFNI
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNI

VVW91355.1 unnamed protein product, partial [Nymphaea colorata]

8.5e-15

52.87

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Query:  YLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGSTLDLLFSIPSLLSGLGCFGFDAFHVTGLYDPGI
        Y+YAS WN+IKNGSI +GS QYGIITPRPF++F+LVD SR  SNNLCSFN   ST    F      S +   GF    ++ + D G+
Subjt:  YLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGSTLDLLFSIPSLLSGLGCFGFDAFHVTGLYDPGI

YP_009679141.1 NADH-plastoquinone oxidoreductase subunit 4 [Teucrium mascatense]

2.6e-19

73.13

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST
        MVTRYP RGTL+YLYAS  N+IKNGSIWI SD+YGII+PR F +F+LV++SR N+NNLCSFNI  ST
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST

YP_009724473.1 NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal]

4.4e-19

73.13

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST
        MVTR+PRRGTLQYLYA   N+IKNGS+WIGS+ YGIITPR F +F+LV+  R NSNNLCSFNI  ST
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST

TrEMBL top hits

e value

%identity

Alignment

A0A3P6E4B1 Uncharacterized protein

2.0e-14

74.07

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Query:  LYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST
        +YAS WN+IKNGSIW GS+QYGIIT R FY+F+LVD SR+N NNLCSFNI  ST
Subjt:  LYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST

A0A498KQZ6 Proton_antipo_M domain-containing protein

5.4e-23

82.54

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNI
        MVTR+P RGTLQYLYA   N+IKNGS+WIGSDQYGIITPRPFY+ +LVD+SRHNSNNLCSFNI
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNI

A0A4Y6I5A8 NADH-plastoquinone oxidoreductase subunit 4

1.2e-19

73.13

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST
        MVTRYP RGTL+YLYAS  N+IKNGSIWI SD+YGII+PR F +F+LV++SR N+NNLCSFNI  ST
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST

A0A5K1HUQ2 Proton_antipo_M domain-containing protein (Fragment)

4.1e-15

52.87

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Query:  YLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGSTLDLLFSIPSLLSGLGCFGFDAFHVTGLYDPGI
        Y+YAS WN+IKNGSI +GS QYGIITPRPF++F+LVD SR  SNNLCSFN   ST    F      S +   GF    ++ + D G+
Subjt:  YLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGSTLDLLFSIPSLLSGLGCFGFDAFHVTGLYDPGI

A0A650F2C7 NADH-plastoquinone oxidoreductase subunit 4

2.1e-19

73.13

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Query:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST
        MVTR+PRRGTLQYLYA   N+IKNGS+WIGS+ YGIITPR F +F+LV+  R NSNNLCSFNI  ST
Subjt:  MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGST

SwissProt top hits

e value

%identity

Alignment

B5LMP9 Photosystem II CP47 reaction center protein

2.0e-11

69.57

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Query:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER
        +LDL  +F I   L+G+GCFGF AFHVTGL+ PGIWVSDPYGLT R
Subjt:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER

Q06FP2 Photosystem II CP47 reaction center protein

1.6e-11

71.74

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Query:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER
        +LDL  +F I   LSG+ CFGF AFHVTGLY PGIWVSDPYGLT R
Subjt:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER

Q09WZ1 Photosystem II CP47 reaction center protein

1.6e-11

71.74

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Query:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER
        +LDL  +F I   LSG+ CFGF AFHVTGLY PGIWVSDPYGLT R
Subjt:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER

Q2QD63 Photosystem II CP47 reaction center protein

1.4e-12

76.09

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Query:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER
        +LDL  +F I   LSGLGCFGF AFHVTGLY PGIWVSDPYGLT R
Subjt:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER

Q9BBQ8 Photosystem II CP47 reaction center protein

1.6e-11

71.74

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Query:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER
        +LDL  +F I   L+GL CFGF AFHVTGLY PGIWVSDPYGLT R
Subjt:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

4.2e-12

72.73

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Query:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLT
        +LDL  +F I   LSG+ CFGF AFHVTGLY PGIWVSDPYGLT
Subjt:  TLDL--LFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLT

Sequences

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CDS sequence

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ATGGTTACCAGATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTTGCTGGAATATTATTAAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGAATTAT
TACCCCACGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCTTCTATTTTCTA
TTCCTTCGCTGCTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCCGATCCTTATGGATTAACCGAAAGA
AAGAGAATGAACGTTAATTTGATCTTGATCCTTGCTGCCATTGCTCTTTAG

mRNA sequence

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ATCATCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTTGCTGGAATATTATTAAAAATGGGAGCATATGGAT
TGGTTCGGATCAATATGGAATTATTACCCCACGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGT
CAACGCTAGATCTTCTATTTTCTATTCCTTCGCTGCTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCC
GATCCTTATGGATTAACCGAAAGAAAGAGAATGAACGTTAATTTGATCTTGATCCTTGCTGCCATTGCTCTTTAG

Protein sequence

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MVTRYPRRGTLQYLYASCWNIIKNGSIWIGSDQYGIITPRPFYLFTLVDHSRHNSNNLCSFNIFGSTLDLLFSIPSLLSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTER
KRMNVNLILILAAIAL

Clc06G08590 (gene) of Watermelon (cordophanus) v2 genome