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Clc06G08730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationClcChr06:10424215..10425134
RNA-Seq ExpressionClc06G08730
SyntenyClc06G08730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038340.1 uncharacterized protein E6C27_scaffold270G002140 [Cucumis melo var. makuwa]8.2e-4050.77Show/hide
Query:  MLDTKVPTTKVFDNRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIYQWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTK
        M DTK P  KV         ++Q T IRL G                + D I   ++I    DD  FA WD ++SMVMTWL+ S+VEDI+ NYMCYS  K
Subjt:  MLDTKVPTTKVFDNRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIYQWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTK

Query:  EIWDS---RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGR---ILGKM----LVIENTAMKASDQSNNTHDKPRVWCD
        E+WDS    IWQDLDLFD+YEWKS +DQKHY KTV+DGHIYKFL G  VE D+   R   ++GK+    LV E TA KASD SN  H+KP+VW D
Subjt:  EIWDS---RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGR---ILGKM----LVIENTAMKASDQSNNTHDKPRVWCD

RVX22762.1 hypothetical protein CK203_008232 [Vitis vinifera]2.0e-3337.31Show/hide
Query:  NRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWD--------
        N T  + +VQ+TTI LNGDNF    +  R      G   Y       S  DD ++A+WDVE+SMVMTWL+ SM EDI+ NYMCY TT+E+W+        
Subjt:  NRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWD--------

Query:  ----SRIWQ-----DLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM-----------------------------LVIENTA
            S+I++     DLDLF+TYEWKS +D+ H+ KT+ED  I+KFL GL VE DE RGRI+G+                              + IE +A
Subjt:  ----SRIWQ-----DLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM-----------------------------LVIENTA

Query:  M--------KASDQSNNTHDKPRVWCDHWQQTLSYAKNLLETSWKTCKLEELQ-TMREIPTSMLLMRI
        +        KA+     + ++PRVWCD   +     +N  +   K    +E Q T +  P  +LLMR+
Subjt:  M--------KASDQSNNTHDKPRVWCDHWQQTLSYAKNLLETSWKTCKLEELQ-TMREIPTSMLLMRI

XP_006471430.1 uncharacterized protein LOC102629445 [Citrus sinensis]2.3e-3436.47Show/hide
Query:  RTH-NTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS-------
        R H N+ +VQ+TTIRLNGDNF    +  R     +G   Y        + DD  +A WD E+SMVMTWL+ SM EDI+SNYMCY T KE+WD+       
Subjt:  RTH-NTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS-------

Query:  --------------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGK---------------
                                        R+WQDLDLF+TYEWKS DD  H+ KTVED  IYKFL GL VE DE RGRI+G+               
Subjt:  --------------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGK---------------

Query:  ---------------------MLVIENTAMKASDQSNNTHDKPRVWCDHWQQTLSYAKNLLETSWK
                              L+ +  A K ++    + DK + WCDH  +     ++  E  WK
Subjt:  ---------------------MLVIENTAMKASDQSNNTHDKPRVWCDHWQQTLSYAKNLLETSWK

XP_024019292.1 uncharacterized protein LOC112090970 [Morus notabilis]1.1e-3655.4Show/hide
Query:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDSRIWQDLDLFDTYEW
        +V +TTIRLNGDNF    +  R      G   Y        + DD ++A WD E+SMVMTWL+ SM EDI SNYMCY T +E+W++R WQDLDLF+TYEW
Subjt:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDSRIWQDLDLFDTYEW

Query:  KSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGK
        KS +D +H+ KTVED H +KFL GL VE DE RGRI+G+
Subjt:  KSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGK

XP_024046376.1 uncharacterized protein LOC112100792 [Citrus clementina]1.4e-3435.97Show/hide
Query:  TKVPTTKVFDNRTHNTPT----VQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYST
        T +PT      +T  + T    +Q+TTI+LNG+NF    +  R      G   Y    T   + DD ++  WD E+SMVMTWL+ SM EDI+SNYMCY T
Subjt:  TKVPTTKVFDNRTHNTPT----VQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYST

Query:  TKEIWDS---------------------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGK-
         KE+WD+                                       R+WQDLDLF+ YEWKS +D KH+ KTVED  I+KFL+GL VE DE RGRI+G+ 
Subjt:  TKEIWDS---------------------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGK-

Query:  ----------------------------MLVIENTAMKASDQSNNT-----HDKPRVWCDHWQQTLSYAKNLLETSWK
                                    +  IEN+A+ AS  +  T      +K RVWCDH  +     ++  ET WK
Subjt:  ----------------------------MLVIENTAMKASDQSNNT-----HDKPRVWCDHWQQTLSYAKNLLETSWK

TrEMBL top hitse value%identityAlignment
A0A2N9EE05 Uncharacterized protein8.6e-3535Show/hide
Query:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------
        +VQ+TTIRLNGDNF    +  R      G   Y        +  D ++A WD E+SMVMTWL+ SM EDI+SNYMCY T +E+W++              
Subjt:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------

Query:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------
                                 R+WQDLDLF+TYEWKS++D +H+ K VED  I+KFL GL +E DE RGR++G+                      
Subjt:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------

Query:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK
                + +E++A+ A+D +++        T DKPRVWCD+  +      +  ET WK
Subjt:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK

A0A2N9G446 Uncharacterized protein3.9e-3535Show/hide
Query:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------
        +VQ+TTIRLNGDNF    +  R      G   Y        +  D ++A WD E+SMVMTWL+ SM EDI+SNYMCY T +E+W++              
Subjt:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------

Query:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------
                                 R+WQDLDLF+TYEWKS++D +H+ K VED  I+KFL GL +E DE RGR++G+                      
Subjt:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------

Query:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK
                + +E++A+ A+D +++        T DKPRVWCD+  +     ++  ET WK
Subjt:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK

A0A2N9GQ49 Uncharacterized protein1.5e-3434.62Show/hide
Query:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------
        +VQ+TTIRLNGDNF    +  R      G   Y        +  D ++A WD E+SMVMTWL+ SM EDI+SNYMCY T +E+W++              
Subjt:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------

Query:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------
                                 R+WQDLDLF+TYEWKS++D +H+ K VED  I+KFL GL +E DE RGR++G+                      
Subjt:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------

Query:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK
                + +E++A+ A+D +++        T DKP+VWCD+  +     ++  ET WK
Subjt:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK

A0A2N9I543 Uncharacterized protein3.9e-3535Show/hide
Query:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------
        +VQ+TTIRLNGDNF    +  R      G   Y        +  D ++A WD E+SMVMTWL+ SM EDI+SNYMCY T +E+W++              
Subjt:  TVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIY-QWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDS--------------

Query:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------
                                 R+WQDLDLF+TYEWKS++D +H+ K VED  I+KFL GL +E DE RGR++G+                      
Subjt:  -------------------------RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKM---------------------

Query:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK
                + +E++A+ A+D +++        T DKPRVWCD+  +     ++  ET WK
Subjt:  --------LVIENTAMKASDQSNN--------THDKPRVWCDHWQQTLSYAKNLLETSWK

A0A5D3BF30 Uncharacterized protein4.0e-4050.77Show/hide
Query:  MLDTKVPTTKVFDNRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIYQWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTK
        M DTK P  KV         ++Q T IRL G                + D I   ++I    DD  FA WD ++SMVMTWL+ S+VEDI+ NYMCYS  K
Subjt:  MLDTKVPTTKVFDNRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIYQWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTK

Query:  EIWDS---RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGR---ILGKM----LVIENTAMKASDQSNNTHDKPRVWCD
        E+WDS    IWQDLDLFD+YEWKS +DQKHY KTV+DGHIYKFL G  VE D+   R   ++GK+    LV E TA KASD SN  H+KP+VW D
Subjt:  EIWDS---RIWQDLDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGR---ILGKM----LVIENTAMKASDQSNNTHDKPRVWCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGACACTAAGGTTCCTACCACTAAAGTCTTCGACAATCGGACCCACAACACTCCCACTGTCCAAATGACCACCATTCGGCTTAACGGGGATAACTTCTTTGTTGG
TCCCAAAGTGTTCAGATGTATATTCGTGAATGAGGGAGATAGGATATATCAGTGGAGAACAATCTGCTCTAGTCCAGATGACACTTCATTTGCTGTGTGGGACGTGGAAG
ACTCCATGGTTATGACTTGGCTCATCAAGTCTATGGTGGAAGATATCAACAGTAACTACATGTGCTACTCTACTACAAAGGAAATATGGGACAGTAGGATTTGGCAAGAT
CTTGATCTATTTGATACGTATGAGTGGAAGTCCATAGATGACCAAAAACATTACGGGAAAACTGTAGAAGATGGTCACATTTACAAATTTCTTGTTGGTCTCATTGTTGA
GCTTGATGAGGCTAGAGGCAGGATACTTGGGAAAATGTTGGTGATTGAAAACACTGCAATGAAAGCTTCTGATCAATCCAACAATACTCATGACAAGCCTCGTGTCTGGT
GCGATCATTGGCAACAAACCTTGTCATATGCGAAAAACTTGTTGGAAACTTCATGGAAAACCTGCAAATTGGAAGAGCTCCAAACAATGAGAGAAATTCCCACCAGCATG
CTTCTAATGCGAATATTGTTGATTCCAGTCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGACACTAAGGTTCCTACCACTAAAGTCTTCGACAATCGGACCCACAACACTCCCACTGTCCAAATGACCACCATTCGGCTTAACGGGGATAACTTCTTTGTTGG
TCCCAAAGTGTTCAGATGTATATTCGTGAATGAGGGAGATAGGATATATCAGTGGAGAACAATCTGCTCTAGTCCAGATGACACTTCATTTGCTGTGTGGGACGTGGAAG
ACTCCATGGTTATGACTTGGCTCATCAAGTCTATGGTGGAAGATATCAACAGTAACTACATGTGCTACTCTACTACAAAGGAAATATGGGACAGTAGGATTTGGCAAGAT
CTTGATCTATTTGATACGTATGAGTGGAAGTCCATAGATGACCAAAAACATTACGGGAAAACTGTAGAAGATGGTCACATTTACAAATTTCTTGTTGGTCTCATTGTTGA
GCTTGATGAGGCTAGAGGCAGGATACTTGGGAAAATGTTGGTGATTGAAAACACTGCAATGAAAGCTTCTGATCAATCCAACAATACTCATGACAAGCCTCGTGTCTGGT
GCGATCATTGGCAACAAACCTTGTCATATGCGAAAAACTTGTTGGAAACTTCATGGAAAACCTGCAAATTGGAAGAGCTCCAAACAATGAGAGAAATTCCCACCAGCATG
CTTCTAATGCGAATATTGTTGATTCCAGTCATTTAA
Protein sequenceShow/hide protein sequence
MLDTKVPTTKVFDNRTHNTPTVQMTTIRLNGDNFFVGPKVFRCIFVNEGDRIYQWRTICSSPDDTSFAVWDVEDSMVMTWLIKSMVEDINSNYMCYSTTKEIWDSRIWQD
LDLFDTYEWKSIDDQKHYGKTVEDGHIYKFLVGLIVELDEARGRILGKMLVIENTAMKASDQSNNTHDKPRVWCDHWQQTLSYAKNLLETSWKTCKLEELQTMREIPTSM
LLMRILLIPVI