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Clc06G08780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G08780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionKeratin, type I cytoskeletal 10-like
Genome locationClcChr06:10431101..10431548
RNA-Seq ExpressionClc06G08780
SyntenyClc06G08780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039074.1 keratin, type I cytoskeletal 10-like [Cucumis melo var. makuwa]8.6e-0752.63Show/hide
Query:  SKQKDAEEKEDGIH---APSNKEVPLFDMRLRKLEVPIFKGEDDGNPDGWLHRVERY
        ++  + E   +GI    AP+ +++PLF MRL KLEVPIFKGE++ N D WLH VERY
Subjt:  SKQKDAEEKEDGIH---APSNKEVPLFDMRLRKLEVPIFKGEDDGNPDGWLHRVERY

TYJ97047.1 aminoacyl-tRNA ligase [Cucumis melo var. makuwa]3.1e-0482.76Show/hide
Query:  MRLRKLEVPIFKGEDDGNPDGWLHRVERY
        MRLRKLEVPIFKGE+  + DGWLHRVERY
Subjt:  MRLRKLEVPIFKGEDDGNPDGWLHRVERY

XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]1.1e-0936.62Show/hide
Query:  MVEKMESRVIVLEKKLLEIAECQTTMESKMEGQFCEAKD-ARTEIIVKVDHLSNQKEGKAVMGL----------------TSEGIISDSKQKDAEEKEDG
        MV+KME+R+  +E++L  +   Q  ME++M+ +F E +    + +I K++ L    E K +  L                +SE  + D  ++ A E    
Subjt:  MVEKMESRVIVLEKKLLEIAECQTTMESKMEGQFCEAKD-ARTEIIVKVDHLSNQKEGKAVMGL----------------TSEGIISDSKQKDAEEKEDG

Query:  IHAPSNKEVPLFDMRLRKLEVPIFKGEDDGNPDGWLHRVERY
              +EV LFDMRLRKLE+PIFKGE   +P GW HRVERY
Subjt:  IHAPSNKEVPLFDMRLRKLEVPIFKGEDDGNPDGWLHRVERY

TrEMBL top hitse value%identityAlignment
A0A5A7T6F9 Keratin, type I cytoskeletal 10-like4.2e-0752.63Show/hide
Query:  SKQKDAEEKEDGIH---APSNKEVPLFDMRLRKLEVPIFKGEDDGNPDGWLHRVERY
        ++  + E   +GI    AP+ +++PLF MRL KLEVPIFKGE++ N D WLH VERY
Subjt:  SKQKDAEEKEDGIH---APSNKEVPLFDMRLRKLEVPIFKGEDDGNPDGWLHRVERY

A0A5D3BD43 Aminoacyl-tRNA ligase1.5e-0482.76Show/hide
Query:  MRLRKLEVPIFKGEDDGNPDGWLHRVERY
        MRLRKLEVPIFKGE+  + DGWLHRVERY
Subjt:  MRLRKLEVPIFKGEDDGNPDGWLHRVERY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAAAAATGGAAAGTAGGGTTATCGTGTTGGAGAAGAAGCTACTCGAAATAGCAGAATGTCAGACAACCATGGAATCGAAAATGGAAGGCCAATTCTGT
GAGGCTAAAGATGCTCGGACGGAGATTATAGTAAAGGTGGATCATTTGTCGAATCAGAAAGAAGGGAAAGCAGTGATGGGTTTGACTTCAGAAGGAATCATAAGT
GATAGTAAACAAAAGGATGCAGAGGAGAAGGAGGATGGGATTCACGCACCTTCGAATAAAGAAGTGCCCTTATTTGATATGAGATTGCGGAAGCTGGAGGTTCCC
ATCTTCAAAGGAGAGGACGATGGTAACCCTGATGGGTGGCTACACCGTGTTGAACGCTACTTGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAAAAAATGGAAAGTAGGGTTATCGTGTTGGAGAAGAAGCTACTCGAAATAGCAGAATGTCAGACAACCATGGAATCGAAAATGGAAGGCCAATTCTGT
GAGGCTAAAGATGCTCGGACGGAGATTATAGTAAAGGTGGATCATTTGTCGAATCAGAAAGAAGGGAAAGCAGTGATGGGTTTGACTTCAGAAGGAATCATAAGT
GATAGTAAACAAAAGGATGCAGAGGAGAAGGAGGATGGGATTCACGCACCTTCGAATAAAGAAGTGCCCTTATTTGATATGAGATTGCGGAAGCTGGAGGTTCCC
ATCTTCAAAGGAGAGGACGATGGTAACCCTGATGGGTGGCTACACCGTGTTGAACGCTACTTGTGGTGA
Protein sequenceShow/hide protein sequence
MVEKMESRVIVLEKKLLEIAECQTTMESKMEGQFCEAKDARTEIIVKVDHLSNQKEGKAVMGLTSEGIISDSKQKDAEEKEDGIHAPSNKEVPLFDMRLRKLEVP
IFKGEDDGNPDGWLHRVERYLW