CuGenDBv2

Gene ID	Clc06G08945
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S4, chloroplastic
Genome location	ClcChr06:11271812..11272506
RNA-Seq Expression	Clc06G08945
Synteny	Clc06G08945
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001912 - Ribosomal protein S4/S9, N-terminal IPR022801 - Ribosomal protein S4/S9

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88823.1 ribosomal protein S4 [Lagenaria siceraria]

6.0e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

QJR52958.1 ribosomal protein S4 [Herpetospermum pedunculosum]

6.0e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

RZC45333.1 hypothetical protein C5167_038300 [Papaver somniferum]

4.6e-32

85.23

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPK GNDL+NQSCSGKKSQYRIRLEEKQKL FHYG+TERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

YP_009317388.1 ribosomal protein S4 [Coccinia grandis]

6.0e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

YP_247601.1 ribosomal protein S4 [Cucumis sativus]

2.1e-32

85.71

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Query:  RASFKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        R  FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  RASFKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU11 30S ribosomal protein S4, chloroplastic

2.9e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A0A1X9Q1U9 30S ribosomal protein S4, chloroplastic

2.9e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A0A218KG36 30S ribosomal protein S4, chloroplastic

2.9e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A0A249RZ87 30S ribosomal protein S4, chloroplastic

2.9e-32

87.5

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A0A4Y7I8R6 Uncharacterized protein ycf72

2.2e-32

85.23

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPK GNDL+NQSCSGKKSQYRIRLEEKQKL FHYG+TERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

SwissProt top hits

e value

%identity

Alignment

A4QJB7 30S ribosomal protein S4, chloroplastic

5.6e-33

82.95

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRP+ G+DL+NQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A4QKA7 30S ribosomal protein S4, chloroplastic

2.5e-33

84.09

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPK G+DL+NQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A4QLA8 30S ribosomal protein S4, chloroplastic

2.5e-33

84.09

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPK G+DL+NQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

A4QLT5 30S ribosomal protein S4, chloroplastic

2.5e-33

84.09

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPK G+DL+NQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

Q4VZH3 30S ribosomal protein S4, chloroplastic

2.7e-35

85.71

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Query:  RASFKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        R  FKKI  LG LPGLTSKRPKTGNDLKNQS SGKKSQYRIRLEEKQKL FHYGLTERQLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  RASFKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00380.1 chloroplast ribosomal protein S4

7.5e-33

81.82

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Query:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF
        FKKI  LG LPGLTSKRPK G+DL+NQS S KKSQYRIRLEEKQKL FHYGLTE QLLKYV I GKAKGS GQVLL+LLE+RLD+ILF
Subjt:  FKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILF

Sequences

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CDS sequence

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ATGCATAGGGCCTCGTTTAAAAAAATACATTGTCTGGGGGGTTTACCGGGACTAACTAGTAAAAGGCCGAAAACCGGAAATGATCTTAAAAACCAATCGTGTTCTGGTAA
AAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTATGTTTTCATTATGGTCTTACGGAACGACAATTACTTAAATACGTTTGTATCACCGGAAAAGCCAAAG
GATCAATAGGTCAAGTTTTACTACGATTACTTGAAATACGTTTGGATAGCATCCTTTTCGATTGTATATGGCTTTGA

mRNA sequence

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Protein sequence

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MHRASFKKIHCLGGLPGLTSKRPKTGNDLKNQSCSGKKSQYRIRLEEKQKLCFHYGLTERQLLKYVCITGKAKGSIGQVLLRLLEIRLDSILFDCIWL

Clc06G08945 (gene) of Watermelon (cordophanus) v2 genome