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Clc06G09010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr06:11315963..11316946
RNA-Seq ExpressionClc06G09010
SyntenyClc06G09010
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032570.1 protein SAND [Cucumis melo var. makuwa]9.0e-2138.76Show/hide
Query:  FFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQ--------
        FFWEG+   KLN+L KWELVT+                   L +W  R        W K ++SIH +  F WHT+GK + SLRSPW SIS+Q        
Subjt:  FFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQ--------

Query:  -----------------------WLK----EEIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNK
                               W+K      IA  P GSV +YWD ++SSW I FR LLK+EEISDFQ LL ++D +
Subjt:  -----------------------WLK----EEIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNK

TYJ97221.1 putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa]8.2e-2242.17Show/hide
Query:  RNFFWEGHKGGKLNHLAKWELVT-------------------RLKRWGTR--------SWKFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE-
        RNFFWEG  G KLNHL KW LV+                    L +WG R          K I SIHG   FDW T  K   SLRSPW SISK W   E 
Subjt:  RNFFWEGHKGGKLNHLAKWELVT-------------------RLKRWGTR--------SWKFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE-

Query:  --------IAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS
                IA  P G VAD+WD  T SW + FRR LKD EI +F+  L+ +  + VL       WS
Subjt:  --------IAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS

TYK06564.1 hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa]1.3e-1935.98Show/hide
Query:  MRNFFWEGHKGGKLNHLAKWELV------------TRLKRWGTRSWKFI-----------KSIHGNGLFDWHTNGKGNGSLRSPWTSI------------
        +RN FWEGH G ++NHL KW  V            T L +WG   W FI           +SI+G     WHT GK   SL+SPW  I            
Subjt:  MRNFFWEGHKGGKLNHLAKWELV------------TRLKRWGTRSWKFI-----------KSIHGNGLFDWHTNGKGNGSLRSPWTSI------------

Query:  ------------SKQWLKE-----------EIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS
                    S  W++E            ++  PNGSVA  WD +T SW I FRRL K+EEIS+FQQLL  + N+ V        WS
Subjt:  ------------SKQWLKE-----------EIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS

TYK14440.1 uncharacterized protein E5676_scaffold186G00990 [Cucumis melo var. makuwa]3.9e-1635Show/hide
Query:  MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTRSWK--------FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE
        +RNFFWEG+ G K+NH   W+ VT                    L +WG R  K         ++SIHG   FDW T  K   SLRSPW  IS++W K E
Subjt:  MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTRSWK--------FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE

Query:  IAAK--------------------------------PNGSVADYWDPTTSSWDISFRRLL
        I A                                 P  SVA +WD  T+SW I FRRLL
Subjt:  IAAK--------------------------------PNGSVADYWDPTTSSWDISFRRLL

XP_038880332.1 uncharacterized protein LOC120071973 [Benincasa hispida]1.3e-1648.54Show/hide
Query:  MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE
        M+NFFWEGHKGGK+NHL KWELVT+                   L +WG R        W K +KSIH   +FDWHT+GK + +LRS W SIS+ WLK E
Subjt:  MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE

Query:  IAA
          A
Subjt:  IAA

TrEMBL top hitse value%identityAlignment
A0A5A7SP09 Vacuolar fusion protein MON1 homolog4.4e-2138.76Show/hide
Query:  FFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQ--------
        FFWEG+   KLN+L KWELVT+                   L +W  R        W K ++SIH +  F WHT+GK + SLRSPW SIS+Q        
Subjt:  FFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTR-------SW-KFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQ--------

Query:  -----------------------WLK----EEIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNK
                               W+K      IA  P GSV +YWD ++SSW I FR LLK+EEISDFQ LL ++D +
Subjt:  -----------------------WLK----EEIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNK

A0A5D3BF26 Putative LRR receptor-like serine/threonine-protein kinase4.0e-2242.17Show/hide
Query:  RNFFWEGHKGGKLNHLAKWELVT-------------------RLKRWGTR--------SWKFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE-
        RNFFWEG  G KLNHL KW LV+                    L +WG R          K I SIHG   FDW T  K   SLRSPW SISK W   E 
Subjt:  RNFFWEGHKGGKLNHLAKWELVT-------------------RLKRWGTR--------SWKFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE-

Query:  --------IAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS
                IA  P G VAD+WD  T SW + FRR LKD EI +F+  L+ +  + VL       WS
Subjt:  --------IAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS

A0A5D3C5F2 Uncharacterized protein6.3e-2035.98Show/hide
Query:  MRNFFWEGHKGGKLNHLAKWELV------------TRLKRWGTRSWKFI-----------KSIHGNGLFDWHTNGKGNGSLRSPWTSI------------
        +RN FWEGH G ++NHL KW  V            T L +WG   W FI           +SI+G     WHT GK   SL+SPW  I            
Subjt:  MRNFFWEGHKGGKLNHLAKWELV------------TRLKRWGTRSWKFI-----------KSIHGNGLFDWHTNGKGNGSLRSPWTSI------------

Query:  ------------SKQWLKE-----------EIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS
                    S  W++E            ++  PNGSVA  WD +T SW I FRRL K+EEIS+FQQLL  + N+ V        WS
Subjt:  ------------SKQWLKE-----------EIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQQLLAAIDNKSVLQCAAIIGWS

A0A5D3CSP2 Uncharacterized protein1.9e-1635Show/hide
Query:  MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTRSWK--------FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE
        +RNFFWEG+ G K+NH   W+ VT                    L +WG R  K         ++SIHG   FDW T  K   SLRSPW  IS++W K E
Subjt:  MRNFFWEGHKGGKLNHLAKWELVTR-------------------LKRWGTRSWK--------FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEE

Query:  IAAK--------------------------------PNGSVADYWDPTTSSWDISFRRLL
        I A                                 P  SVA +WD  T+SW I FRRLL
Subjt:  IAAK--------------------------------PNGSVADYWDPTTSSWDISFRRLL

A0A5D3DH32 Uncharacterized protein5.5e-1644.54Show/hide
Query:  TRSWK-FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAK-----------------------------------PNGSVADYWDPTTSSWD
        T  W+  I+SIHG+  FDWHT  K   SLRSPW SIS++W K EI A                                    P GSVA +WD  T+SW 
Subjt:  TRSWK-FIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAK-----------------------------------PNGSVADYWDPTTSSWD

Query:  ISFRRLLKDEEISDFQQLL
        I FRRLLKDEEI DFQ LL
Subjt:  ISFRRLLKDEEISDFQQLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAACTTCTTTTGGGAAGGTCACAAAGGAGGCAAGTTAAACCACTTGGCCAAATGGGAGCTTGTTACAAGACTTAAAAGATGGGGGACTCGGTCTTGGAAATTCAT
CAAGAGTATTCATGGAAATGGCCTCTTTGATTGGCATACAAATGGCAAAGGAAATGGAAGTTTGAGAAGTCCTTGGACAAGCATCTCTAAACAGTGGCTAAAAGAGGAGA
TAGCAGCCAAACCTAATGGCTCAGTGGCAGATTATTGGGATCCCACCACTTCCTCATGGGATATCTCTTTCAGAAGGCTGTTAAAAGATGAAGAAATTTCTGATTTTCAG
CAACTATTAGCAGCAATTGATAATAAATCAGTGCTGCAATGTGCGGCAATTATTGGCTGGTCCAGCTTTGGAAAAGGAGGCACAACTTCTATGATGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAACTTCTTTTGGGAAGGTCACAAAGGAGGCAAGTTAAACCACTTGGCCAAATGGGAGCTTGTTACAAGACTTAAAAGATGGGGGACTCGGTCTTGGAAATTCAT
CAAGAGTATTCATGGAAATGGCCTCTTTGATTGGCATACAAATGGCAAAGGAAATGGAAGTTTGAGAAGTCCTTGGACAAGCATCTCTAAACAGTGGCTAAAAGAGGAGA
TAGCAGCCAAACCTAATGGCTCAGTGGCAGATTATTGGGATCCCACCACTTCCTCATGGGATATCTCTTTCAGAAGGCTGTTAAAAGATGAAGAAATTTCTGATTTTCAG
CAACTATTAGCAGCAATTGATAATAAATCAGTGCTGCAATGTGCGGCAATTATTGGCTGGTCCAGCTTTGGAAAAGGAGGCACAACTTCTATGATGCAATGA
Protein sequenceShow/hide protein sequence
MRNFFWEGHKGGKLNHLAKWELVTRLKRWGTRSWKFIKSIHGNGLFDWHTNGKGNGSLRSPWTSISKQWLKEEIAAKPNGSVADYWDPTTSSWDISFRRLLKDEEISDFQ
QLLAAIDNKSVLQCAAIIGWSSFGKGGTTSMMQ