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Clc06G09200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionserine-rich protein-related
Genome locationClcChr06:11723409..11724164
RNA-Seq ExpressionClc06G09200
SyntenyClc06G09200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046597.1 hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]4.0e-2770Show/hide
Query:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK
        MCYPH FLPR +FL+ +CNWVL QT  A     A ESCG    +RRCLCSPT HPGSFRCRLHRSEYVWV RRR VKN SAE K LT DK
Subjt:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK

KAG6589902.1 hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2775Show/hide
Query:  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKL
        MCYPHD  PR+EFL V+CNWVLLQT   AA A ES GG   ++RCLCSPTRHPGSFRCRLHRSEYVWVGR RMVK+G A SKK+
Subjt:  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKL

KGN65356.1 hypothetical protein Csa_020011 [Cucumis sativus]3.6e-2870Show/hide
Query:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK
        MCYPH FL R++F +++CNWVL QTT A  A  A ESCG    +RRCLCSPTRHPGSFRCRLHR+EYVWV RRR VKNG AE K LT DK
Subjt:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK

PON73298.1 hypothetical protein PanWU01x14_058020 [Parasponia andersonii]1.7e-0940Show/hide
Query:  MCY-------PHDFLPRKEFLAVKCNWVLLQTTAAAA-----EAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGS
        MCY       P D   R+ + A++ N   +  TA  A     E  E+ GGG  ++ CLCSPT+HPGSFRCR H++EY W GR   +++ +
Subjt:  MCY-------PHDFLPRKEFLAVKCNWVLLQTTAAAA-----EAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGS

RXH74560.1 hypothetical protein DVH24_029281 [Malus domestica]6.4e-0954.41Show/hide
Query:  FLAVKCNWVLLQTTAAAAEAAE-SCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSA
        ++AV+    L    AAA    E + GGG   RRCLCSPTRHPGSFRCR HR+EYVW G R++  N S+
Subjt:  FLAVKCNWVLLQTTAAAAEAAE-SCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSA

TrEMBL top hitse value%identityAlignment
A0A0A0LZG6 Uncharacterized protein1.7e-2870Show/hide
Query:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK
        MCYPH FL R++F +++CNWVL QTT A  A  A ESCG    +RRCLCSPTRHPGSFRCRLHR+EYVWV RRR VKNG AE K LT DK
Subjt:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK

A0A151S3D7 Uncharacterized protein5.3e-0945.33Show/hide
Query:  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE-----RRCLCSPTRHPGSFRCRLHRSEYVWVGR
        MC+P      +E L V   W++ Q    A       GGG +E     +RC+CSP++HPGSFRCRLH +EYVW GR
Subjt:  MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAE-----RRCLCSPTRHPGSFRCRLHRSEYVWVGR

A0A2P5DJ33 Uncharacterized protein8.1e-1040Show/hide
Query:  MCY-------PHDFLPRKEFLAVKCNWVLLQTTAAAA-----EAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGS
        MCY       P D   R+ + A++ N   +  TA  A     E  E+ GGG  ++ CLCSPT+HPGSFRCR H++EY W GR   +++ +
Subjt:  MCY-------PHDFLPRKEFLAVKCNWVLLQTTAAAA-----EAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGS

A0A498HUV8 Uncharacterized protein3.1e-0954.41Show/hide
Query:  FLAVKCNWVLLQTTAAAAEAAE-SCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSA
        ++AV+    L    AAA    E + GGG   RRCLCSPTRHPGSFRCR HR+EYVW G R++  N S+
Subjt:  FLAVKCNWVLLQTTAAAAEAAE-SCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSA

A0A5A7TXE6 Uncharacterized protein1.9e-2770Show/hide
Query:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK
        MCYPH FLPR +FL+ +CNWVL QT  A     A ESCG    +RRCLCSPT HPGSFRCRLHRSEYVWV RRR VKN SAE K LT DK
Subjt:  MCYPHDFLPRKEFLAVKCNWVLLQTTAA--AAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52342.1 unknown protein3.2e-0642.86Show/hide
Query:  VLLQTTAAAAEAAESCG-GGKAERRCLCSPTRHPGSFRCRLHRSEYVWV
        V + T   A     S G GG  +++C+CSP++HP SF+CR H+ EY W+
Subjt:  VLLQTTAAAAEAAESCG-GGKAERRCLCSPTRHPGSFRCRLHRSEYVWV

AT1G67910.1 unknown protein3.5e-0589.47Show/hide
Query:  CLCSPTRHPGSFRCRLHRS
        CLCSPT HPGSFRCR+HRS
Subjt:  CLCSPTRHPGSFRCRLHRS

AT1G67910.2 unknown protein3.5e-0589.47Show/hide
Query:  CLCSPTRHPGSFRCRLHRS
        CLCSPT HPGSFRCR+HRS
Subjt:  CLCSPTRHPGSFRCRLHRS

AT5G11090.1 serine-rich protein-related2.7e-0570.83Show/hide
Query:  KAERRCLCSPTRHPGSFRCRLHRS
        K  RRC+CSPT HPGSFRC LH++
Subjt:  KAERRCLCSPTRHPGSFRCRLHRS

AT5G25280.1 serine-rich protein-related6.0e-0569.57Show/hide
Query:  AERRCLCSPTRHPGSFRCRLHRS
        + RRC+CSPT HPGSFRC LH++
Subjt:  AERRCLCSPTRHPGSFRCRLHRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTACCCACACGATTTCCTGCCTCGGAAGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGCGGCGGAGGCGGCTGAGAGTTGCGG
CGGCGGAAAGGCGGAAAGGCGGTGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGGCGGCGGCGGATGG
TAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAAGGATAAGTAA
mRNA sequenceShow/hide mRNA sequence
CTTTGCTTCATGCCTCACTTATAAAAACTCCAATTCCACATATTCTTTTCTTTACAGTCCCCACAAGATAACCCAAAACATAAAGAGATTACAATTTACAAAGGAGAGGA
ACAAAAACGAAAAATGTGTTACCCACACGATTTCCTGCCTCGGAAGGAGTTTTTGGCTGTGAAATGCAATTGGGTCCTCTTGCAAACCACCGCGGCGGCGGCGGAGGCGG
CTGAGAGTTGCGGCGGCGGAAAGGCGGAAAGGCGGTGCTTGTGCTCGCCGACGAGGCACCCGGGGTCGTTTCGTTGCAGGCTTCACCGAAGTGAGTACGTTTGGGTCGGG
CGGCGGCGGATGGTAAAAAATGGATCGGCGGAGAGTAAAAAATTGACGAAGGATAAGTAATTACTGTTGTGGTCTCTGTAAAATAAAATGAATGAGCGTGTGTATTATAT
ACATCCATAATTGTGATTGCATGCAATCGCAAAAAGAGTGAATAATTGTGGTCTTTAATTTGGTTAAGGTTTTCGGAATTTGACTTTGTCCACTAATTTCCGATGGTATG
AGTCCAGTTTCCACTTGTCACTCAATTCATGTCGTCTTTGAAGAAGAAATATTGAGAGGTTAAACTTTTGTTAAATAGGTGGAATGTCTATTTCTGAGTTTATGTTATTA
CTGTTTTTTGTCATCTAATGTAACACATGCACCTTTGTATTATAAAAATAAAGTAAAACTCGTAAAAATGCTTTGAAAAATCATGCAAAAATGTAG
Protein sequenceShow/hide protein sequence
MCYPHDFLPRKEFLAVKCNWVLLQTTAAAAEAAESCGGGKAERRCLCSPTRHPGSFRCRLHRSEYVWVGRRRMVKNGSAESKKLTKDK