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Clc06G09220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionserine-rich protein-related
Genome locationClcChr06:11738098..11738743
RNA-Seq ExpressionClc06G09220
SyntenyClc06G09220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046595.1 hypothetical protein E6C27_scaffold114G001360 [Cucumis melo var. makuwa]2.6e-3189.41Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA
        M S  KMSISIPS+AKSAG+GDGVA HSCSSK QCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS AASADAS+TSDLSPKSVESA
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA

KAE8653119.1 hypothetical protein Csa_020123 [Cucumis sativus]3.1e-2990.24Show/hide
Query:  KMSISIPSSAKSAGEGDGVA--AHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA
        KMSI IPS+AKSAGEGDGV   +HSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS AASADAS+TSDLSPKSVESA
Subjt:  KMSISIPSSAKSAGEGDGVA--AHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA

KAF3961111.1 hypothetical protein CMV_014232 [Castanea mollissima]6.6e-1152.38Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES
        MASHG +++   S++  +GEG+ V   S S KGQCLCSPTTH GSFRCR HRS+S  W ++SK+  A+      +  SPKSVES
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES

KAG6589904.1 hypothetical protein SDJN03_15327, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3084.71Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK-SAAASADASHTSDLSPKSVES
        M++HGK+ ISIPSSAKS G+GDGVAAH+CSSKGQCLCSPTTHPGSFRCRLHRSNSLPW+R SK +A++SADASHTSDLSPKSVES
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK-SAAASADASHTSDLSPKSVES

OUZ99929.1 hypothetical protein BVC80_9069g38 [Macleaya cordata]1.5e-1055.81Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSS-KGQCLCSPTTHPGSFRCRLHRSNSLPW-SRQSKSAAASADASHTSDLSPKSVES
        M SHG +++S+  S K  G G  VA  S +S KGQCLCSPTTH GSFRCR HRS S  W  ++SKS  A++ A+ T+ +SPKSVES
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSS-KGQCLCSPTTHPGSFRCRLHRSNSLPW-SRQSKSAAASADASHTSDLSPKSVES

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ0 Uncharacterized protein2.3e-3087.36Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVA--AHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA
        M S  KMSI IPS+AKSAGEGDGV   +HSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS AASADAS+TSDLSPKSVESA
Subjt:  MASHGKMSISIPSSAKSAGEGDGVA--AHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA

A0A200PNZ0 Uncharacterized protein7.1e-1155.81Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSS-KGQCLCSPTTHPGSFRCRLHRSNSLPW-SRQSKSAAASADASHTSDLSPKSVES
        M SHG +++S+  S K  G G  VA  S +S KGQCLCSPTTH GSFRCR HRS S  W  ++SKS  A++ A+ T+ +SPKSVES
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSS-KGQCLCSPTTHPGSFRCRLHRSNSLPW-SRQSKSAAASADASHTSDLSPKSVES

A0A5D3BJV5 Uncharacterized protein1.2e-3189.41Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA
        M S  KMSISIPS+AKSAG+GDGVA HSCSSK QCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS AASADAS+TSDLSPKSVESA
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA

A0A5N6QHE2 Uncharacterized protein1.2e-1051.19Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES
        MASHG +++   S++  +G+ + V   S S KGQCLCSPTTH GSFRCR HRS+S  W ++SKS  A    S  + +SPKS+ES
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES

A0A6N2KNM0 Uncharacterized protein4.6e-1058.82Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGV-AAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES
        MASHG +SI   S++  +G G+GV AA S S KGQCLCSPTTH GSFRCRLHRS S   S   +S +     + TS LSPKSVES
Subjt:  MASHGKMSISIPSSAKSAGEGDGV-AAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24577.1 unknown protein4.4e-0542.86Show/hide
Query:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSL
        M   G M      +A   G   G++  +  +K  C+CSPTTHPGSF+C+LHR+ SL
Subjt:  MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSL

AT1G67910.1 unknown protein8.0e-0742.68Show/hide
Query:  GKMSISIPSSAKSAGE--GDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES
        G M + I S   SA E    G++  +  +K  CLCSPTTHPGSFRCR+HRS SL  ++       S +A+   D  PK  +S
Subjt:  GKMSISIPSSAKSAGE--GDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES

AT1G67910.2 unknown protein8.0e-0742.68Show/hide
Query:  GKMSISIPSSAKSAGE--GDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES
        G M + I S   SA E    G++  +  +K  CLCSPTTHPGSFRCR+HRS SL  ++       S +A+   D  PK  +S
Subjt:  GKMSISIPSSAKSAGE--GDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVES

AT3G13227.1 serine-rich protein-related2.0e-0552.17Show/hide
Query:  PSSAKSAGEGDGVAAHSCSS--KGQCLCSPTTHPGSFRCRLHRSNS
        P   +  G G G    S SS  +  CLC+PTTHPGSFRCR HR N+
Subjt:  PSSAKSAGEGDGVAAHSCSS--KGQCLCSPTTHPGSFRCRLHRSNS

AT5G55980.1 serine-rich protein-related5.7e-0570.37Show/hide
Query:  SSKGQCLCSPTTHPGSFRCRLHRSNSL
        S++  CLCSPTTH GSFRCR HR +SL
Subjt:  SSKGQCLCSPTTHPGSFRCRLHRSNSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCCACGGCAAAATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGGGACGGCGTGGCGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTG
CTCACCCACGACTCATCCCGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACA
CCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
TGAACAAATTTACAAGTTTATGAAGATTAAACCTTTCAACAACCAAAGTCCATGGTATTTTCAATTTTGTATAATATAACTTCAAAACTTACCTCAAATAATTGTGATAG
GCATTGACACGTGGCATAATCATACTGCTTCAGATCCACTCCCTGTTTATATAAAACCGCAATCTGTAGTTTCCCCAATTTGCTTTGCAAAAATGGCATCCCACGGCAAA
ATGAGCATCAGCATCCCTTCCTCCGCCAAAAGCGCCGGCGAGGGGGACGGCGTGGCGGCGCACTCCTGTTCATCGAAAGGCCAATGCCTCTGCTCACCCACGACTCATCC
CGGTTCCTTCCGGTGCCGGCTTCACCGTTCGAATTCGTTGCCCTGGAGCAGGCAGTCCAAGTCCGCCGCCGCATCGGCCGACGCCTCTCACACCTCAGATCTCTCTCCAA
AGTCAGTTGAATCTGCTTGATTTTTCACTCGCCCTTCAATTTCGATTTATCCGAAACAAATAATGAAATCCTCTGTAAATATTTATGTCTTCCTCTCTCTCTCTCTCTCT
CGTTAATTAAATACCAGAATCGGTTTCTATCCGTCTGTTTGTTTCCATGGCGATCCTTTGATTTTAATTTCGGATAATTTCTCCTCTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MASHGKMSISIPSSAKSAGEGDGVAAHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSAAASADASHTSDLSPKSVESA