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Clc06G09480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDynein light chain
Genome locationClcChr06:12299444..12300312
RNA-Seq ExpressionClc06G09480
SyntenyClc06G09480
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150050.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.5e-3791.11Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        MLEGKATVKETDMSEKMQ+HAMASAS ALDLFDVSDSLSLASHIKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSL+TLNFLIFK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

XP_008462685.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]4.4e-3790Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        MLEGKATVKETDMSEKMQ+HAMASASHALDLFDVSD LSLAS+IKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSL+TLNFLIFK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

XP_022144999.1 dynein light chain 1, cytoplasmic-like [Momordica charantia]4.1e-3587.64Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFK
        MLEGK  VKETDMSEKMQIHAMASASHALDLFDVSD LSLA+HIKKEFDRTYG GWQCVVGSNFG FFTHS  +FIYF+L+TLNFLIFK
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFK

XP_022933771.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]1.1e-3891.21Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKATVK+TDMSEKMQIHA ASASHALDLFDVSD LSLA+HIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSL+TLNFLIFKA+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

XP_038878771.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]4.7e-3993.33Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        MLEGKATVKETDMSEKMQ HAMASASHALDLFDVSDSLSLA+HIKK+FDR YGSGWQCVVGSNFGCFFTHSKGSFIYFSL+TLNFLIFK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

TrEMBL top hitse value%identityAlignment
A0A1S3CJ38 Dynein light chain2.1e-3790Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        MLEGKATVKETDMSEKMQ+HAMASASHALDLFDVSD LSLAS+IKK+FD TYGSGWQCVVGSNFGCFFTHS G+FIYFSL+TLNFLIFK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

A0A1S3UQ79 Dynein light chain7.6e-3581.32Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKA VKETDMS KMQIHAMA+ASHALDL+DVSD +S+A+HIKKEFD  YG+GWQCVVGSNFGC+FTHS G+FIYF+L+TLNFLIFK S
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

A0A6J1CTX2 Dynein light chain2.0e-3587.64Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFK
        MLEGK  VKETDMSEKMQIHAMASASHALDLFDVSD LSLA+HIKKEFDRTYG GWQCVVGSNFG FFTHS  +FIYF+L+TLNFLIFK
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFK

A0A6J1EZZ1 Dynein light chain5.1e-3991.21Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKATVK+TDMSEKMQIHA ASASHALDLFDVSD LSLA+HIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSL+TLNFLIFKA+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

A0A6J1I806 Dynein light chain5.1e-3991.21Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKATVK+TDMSEKMQIHA ASASHALDLFDVSD LSLA+HIKKEFDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSL+TLNFLIFKA+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic4.2e-1443.33Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

P61285 Dynein light chain 1, cytoplasmic4.2e-1443.33Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

P63167 Dynein light chain 1, cytoplasmic4.2e-1443.33Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

P63168 Dynein light chain 1, cytoplasmic4.2e-1443.33Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        M + KA +K  DMSE+MQ  ++  A+ AL+ +++     +A+HIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

Q94748 Probable dynein light chain1.9e-1446.67Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA
        M E KA +K  DM E MQ  A+ +A+ ALD +++     +A++IKKEFDR Y   W C+VG +FG + TH    FIYF LQ   FL+FK+
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKA

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 113.2e-1771.19Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCV
        MLEGKA V+++DM  KMQ+ AMA AS ALDLFDV D  S+A HIKKEFD  YGSGWQCV
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 112.4e-3374.73Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKA V+++DM  KMQ+ AMA AS ALDLFDV D  S+A HIKKEFD  YGSGWQCVVGSNFGCFFTHSKG+FIYF L+TL FLIFK +
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

AT3G16120.1 Dynein light chain type 1 family protein3.7e-3475.82Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKA V+ETDM  KMQ+ AM  AS +LDLFDV DS+S+A+HIKKEFD  YGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFK +
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

AT4G27360.1 Dynein light chain type 1 family protein1.7e-2356.04Show/hide
Query:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS
        MLEGKA + +TDM + M+  A++ AS ALD FDV++   +A  IKKEFDR+YGSGWQC+VG++FG F TH  G FI+FS+ +L  L+FK S
Subjt:  MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKAS

AT5G20110.1 Dynein light chain type 1 family protein8.7e-1550Show/hide
Query:  DMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFK
        DM   MQ HA   A   LD  +   S  +A ++KKEFD+ YG  W C+VGS+FG F THS G FIYFS+  L  L+FK
Subjt:  DMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGGAAAGCCACCGTGAAAGAAACCGACATGTCGGAAAAAATGCAGATTCACGCCATGGCCTCTGCATCTCACGCCCTTGATCTCTTCGACGTCTCCGATTC
CCTCTCTCTTGCTTCCCATATCAAGAAGGAATTTGATCGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCCAAGGGGA
GTTTCATCTATTTTTCTCTTCAAACTCTCAATTTTCTCATCTTTAAAGCCTCCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGACAGTTGTCCAAACATCACCTGCAGTGAGTCCATGATGTCTTTAACAGTCACCATGTTCTCATGCTTCTTGGACAACATATTTGATATGCTTGCCAAGACGTAG
ACTTGGACGAGTCATTGTAGGGGGTAGAAGAAAAAGAGAGAGATAAGAGAGCCCATTTCGGCTATGAGAGAGAAATAAAAGAGGAAGCAGCCGGTAAAAAAGATGTTGGA
AGGGAAAGCCACCGTGAAAGAAACCGACATGTCGGAAAAAATGCAGATTCACGCCATGGCCTCTGCATCTCACGCCCTTGATCTCTTCGACGTCTCCGATTCCCTCTCTC
TTGCTTCCCATATCAAGAAGGAATTTGATCGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCCAAGGGGAGTTTCATC
TATTTTTCTCTTCAAACTCTCAATTTTCTCATCTTTAAAGCCTCCTTCTGATTATGTTCTTTAGGGGCAATCTCGTCTACAAAACAAACCCTGTGTATGTATGCATGATG
TATTTGTCACATGTATCTTCTAATTTCTCCTTCTACTATGTTTTATGAATGATTATTAATTCTCATTTCTTTCTTAATTCTTCATTATTTGAGATGTATCCCCTTTTTCT
TTATTATTGCGATTCATATGAGGTTTCCAAAATTAA
Protein sequenceShow/hide protein sequence
MLEGKATVKETDMSEKMQIHAMASASHALDLFDVSDSLSLASHIKKEFDRTYGSGWQCVVGSNFGCFFTHSKGSFIYFSLQTLNFLIFKASF