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Clc06G09630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr06:12770993..12771858
RNA-Seq ExpressionClc06G09630
SyntenyClc06G09630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]2.1e-4567.41Show/hide
Query:  MAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK------------------------------VE
        M GNS+RSKHVWSKVED +LVEALLYLVETGWR DNGTFRPGYLQHLE+ILHEKVPGC LN+NTIECK                              VE
Subjt:  MAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK------------------------------VE

Query:  REIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD
        REIFDLWVR HP+AKG+W K FPHYDDLS VFGKD
Subjt:  REIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.8e-6465.8Show/hide
Query:  MGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQH
        MGI AMLDV DEEN ASVG+D  HIEF+ESS EWTKFRDDLA           +MAGN ++SKHVWSKVED KLVEALLYLVETGWRFDNGTFRPGYLQH
Subjt:  MGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQH

Query:  LERILHEKVPGCTLNQNTIECK------------------------------VEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG
        LE+ILHEKVPGC LN NTIECK                              VEREIFDLWV  HP+AK +WNK FPHYDDLST+FGKD  VG
Subjt:  LERILHEKVPGCTLNQNTIECK------------------------------VEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]1.6e-4554.64Show/hide
Query:  EMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQ
        +MGIGAM DV DEENSASVG+DG                                   N +RSKHVWSKVED K VEALLYLV+TGWR DNGTFR  YLQ
Subjt:  EMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQ

Query:  HLERILHEKVPGCTLNQNTIECK------------------------------VEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG
        HLERI HEKV GC LNQNTIECK                              VEREIFD WVR HP+AKG+WNK FPHYDDLSTVFGK   VG
Subjt:  HLERILHEKVPGCTLNQNTIECK------------------------------VEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.1e-4367.41Show/hide
Query:  MAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK------------------------------VE
        MAG+ +RSKHVWSKVEDTKLVEALLYLVETGWR DNGTFR GYLQ+LERILHEKVPGC LNQNTIECK                              VE
Subjt:  MAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK------------------------------VE

Query:  REIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD
        +EIFDLWVR H +AKG+WNK+F HYDDLSTVFGKD
Subjt:  REIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.5e-4666.91Show/hide
Query:  MAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK------------------------------VE
        M  N +RSKH+WSKVED KLVEALLYLVETGWR DNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK                              VE
Subjt:  MAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECK------------------------------VE

Query:  REIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG
        REIFDLWV  HP+AK +WNK FPHYDD STVFGKD  VG
Subjt:  REIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein2.3e-2943.6Show/hide
Query:  EMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYL
        EM    ++D  DE +S         I +IE+SNEWT++RDDL      +    + MA + R  KH W+K E+  LVE L+ LV   GWR DNGTFRPG +
Subjt:  EMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYL

Query:  QHLERILHEKV----PGCT---LNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG
        + L+R+ H       P C+    N        E+E+FD WV+ HP+AKG+ NK+FPHYD+LS VFGKD   G
Subjt:  QHLERILHEKV----PGCT---LNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG

A0A5A7T091 Retrotransposon protein1.6e-2737.31Show/hide
Query:  DVADEENSAS---VGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYLQHLER
        DV DE+   S          I++IE++NEW+++RD+LA       +    M+ ++R  +HVW++ E+  LVE L+ LV   GW+ DNGTFRPGYL  L R
Subjt:  DVADEENSAS---VGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYLQHLER

Query:  ILHEKVPGCTLNQNT-IECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG
        ++ EK+PGC +   T I+C++                                E+E+FD WVR HP+AKG+ NK FP+YD+L+ VF +D   G
Subjt:  ILHEKVPGCTLNQNT-IECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG

A0A5A7TJS2 Retrotransposon protein2.1e-2737.11Show/hide
Query:  EMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYL
        EM    ++D  DE +S      G  I +IE SNEW++ RD LA+           M  +SR SKH W+K E+ KLVE L+ LV   GWR +NGTFR GYL
Subjt:  EMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYL

Query:  QHLERILHEKVPGCTLNQN-TIECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD
          L+R++ +K+    +  +  ++C+V                                ER++FD WV+ HP+A+G+ +K+FP+YDDLS VF KD
Subjt:  QHLERILHEKVPGCTLNQN-TIECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD

A0A5D3BRF0 Retrotransposon protein2.8e-2740.51Show/hide
Query:  EMGIGAMLDVADEENS--ASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPG
        EM    ++D  DE +S  A+  VD  H  +IE SNEWT +RDDLA           ++A +SR  KH W+K E+  LVE LL LV   GWRFDN TFRP 
Subjt:  EMGIGAMLDVADEENS--ASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPG

Query:  YLQHLERILHEKVPGCTLNQNTIECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD
        YL  L R++  K+PG  ++  TI+ ++                                E+E+FD WV+ HP+AKG+ NK+F HY+ LS VFGKD
Subjt:  YLQHLERILHEKVPGCTLNQNTIECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKD

E5GCB5 Retrotransposon protein1.2e-2738.62Show/hide
Query:  DVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYLQHLERILH
        D  DE +S         I +IE+SNEW+++RD+LA           +M  +SR  KH W+K E+  LVE L+ LV   GWR DNGTFRPGYL  L R++ 
Subjt:  DVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVET-GWRFDNGTFRPGYLQHLERILH

Query:  EKVPGCTLNQNTIECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG
         K+PG  ++ +TI+ ++                                E+E+FD W   HP+AKG+ NK+F HYD+LS VFGKD   G
Subjt:  EKVPGCTLNQNTIECKV--------------------------------EREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein1.5e-0424.34Show/hide
Query:  LDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRP--GYLQHLERI
        L++ DE N  SV + G       S  EWT   D      +          GN+  SK  W    D  ++    +  + G R     +     Y + +E I
Subjt:  LDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRP--GYLQHLERI

Query:  LHEKVPGCTLNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVF
        L E   G + ++  +    +  ++D +++ HP A+    K+ P Y+DL T+F
Subjt:  LHEKVPGCTLNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVF

AT2G24960.2 unknown protein1.5e-0424.34Show/hide
Query:  LDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRP--GYLQHLERI
        L++ DE N  SV + G       S  EWT   D      +          GN+  SK  W    D  ++    +  + G R     +     Y + +E I
Subjt:  LDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRP--GYLQHLERI

Query:  LHEKVPGCTLNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVF
        L E   G + ++  +    +  ++D +++ HP A+    K+ P Y+DL T+F
Subjt:  LHEKVPGCTLNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGGGAATCGGTGCAATGCTTGACGTGGCCGATGAAGAGAATTCTGCATCAGTTGGAGTTGATGGAGCTCATATAGAATTTATTGAATCCTCGAACGAA
TGGACCAAGTTCAGGGATGACTTGGCGCATCTTTTCATTGAACAAACGTATGCATACAGTGTAATGGCAGGTAATAGTAGGAGGTCTAAACACGTATGGTCGAAG
GTGGAGGATACCAAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCGACAATGGGACGTTTCGACCAGGATACTTACAGCACTTGGAGCGA
ATTTTGCATGAGAAAGTGCCTGGGTGCACCTTGAATCAAAACACCATTGAGTGCAAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGATTCATCCCAGTGCG
AAGGGGATATGGAACAAAACATTTCCCCATTACGATGACCTCTCCACCGTATTTGGGAAAGATATAACAGTAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGGGAATCGGTGCAATGCTTGACGTGGCCGATGAAGAGAATTCTGCATCAGTTGGAGTTGATGGAGCTCATATAGAATTTATTGAATCCTCGAACGAA
TGGACCAAGTTCAGGGATGACTTGGCGCATCTTTTCATTGAACAAACGTATGCATACAGTGTAATGGCAGGTAATAGTAGGAGGTCTAAACACGTATGGTCGAAG
GTGGAGGATACCAAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCGACAATGGGACGTTTCGACCAGGATACTTACAGCACTTGGAGCGA
ATTTTGCATGAGAAAGTGCCTGGGTGCACCTTGAATCAAAACACCATTGAGTGCAAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGATTCATCCCAGTGCG
AAGGGGATATGGAACAAAACATTTCCCCATTACGATGACCTCTCCACCGTATTTGGGAAAGATATAACAGTAGGATAA
Protein sequenceShow/hide protein sequence
MEMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLER
ILHEKVPGCTLNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG