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Clc06G09720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr06:12893887..12894629
RNA-Seq ExpressionClc06G09720
SyntenyClc06G09720
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051133.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.3e-1738.19Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H +VVKR+LRYL GT  +G L QP+N LSI A+ DADWA+NIDD KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + +L CDNI  GALA++P+FH RTKHI+IDVH+++DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
KAA0057477.1 Copia protein [Cucumis melo var. makuwa]3.7e-1638.89Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H + VKR+LRY+ GT  YG+L Q N  LSI AF DADWASNI+D KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + IL CDNI  GALA++P+FH RTKHI+IDVH+V DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
TYJ96769.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.3e-1738.19Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H +VVKR+LRYL GT  +G L QP+N LSI A+ DADWA+NIDD KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + +L CDNI  GALA++P+FH RTKHI+IDVH+++DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
TYK30173.1 Copia protein [Cucumis melo var. makuwa]3.7e-1638.89Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H + VKR+LRY+ GT  YG+L Q N  LSI AF DADWASNI+D KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + IL CDNI  GALA++P+FH RTKHI+IDVH+V DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
XP_021659065.1 uncharacterized protein LOC110648985 [Hevea brasiliensis]5.1e-1850Show/hide
Query:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILL---------CDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
        H   VKRILRYLKGT +YGLL+ P++ L I A+ DADWASN+DD KS    ++         CDN+GA  L ++P+FH+R KH+++D H+V+D+
Subjt:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILL---------CDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
TrEMBL top hitse value%identityAlignment
A0A438G0W0 Retrovirus-related Pol polyprotein from transposon RE15.1e-1642.48Show/hide
Query:  VHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRS------------------------ILLCDNIGAGALASSPMFHTRTKHI
        +H    KR+LRYLKGT   GL   P ++L +  + DADWAS+IDD +S                           ++ CDN GAGALA++P+FH+RTKHI
Subjt:  VHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRS------------------------ILLCDNIGAGALASSPMFHTRTKHI

Query:  DIDVHYVQDQSTD
        ++DVHYV++Q  D
Subjt:  DIDVHYVQDQSTD
A0A5A7U5H7 Putative mitochondrial protein2.1e-1738.19Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H +VVKR+LRYL GT  +G L QP+N LSI A+ DADWA+NIDD KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + +L CDNI  GALA++P+FH RTKHI+IDVH+++DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
A0A5A7US38 Copia protein1.8e-1638.89Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H + VKR+LRY+ GT  YG+L Q N  LSI AF DADWASNI+D KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + IL CDNI  GALA++P+FH RTKHI+IDVH+V DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
A0A5D3BCJ6 Putative mitochondrial protein2.1e-1738.19Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H +VVKR+LRYL GT  +G L QP+N LSI A+ DADWA+NIDD KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + +L CDNI  GALA++P+FH RTKHI+IDVH+++DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
A0A5D3E251 Copia protein1.8e-1638.89Show/hide
Query:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------
        ++H + VKR+LRY+ GT  YG+L Q N  LSI AF DADWASNI+D KSV                                                  
Subjt:  NVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSV--------------------------------------------------

Query:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
               + IL CDNI  GALA++P+FH RTKHI+IDVH+V DQ
Subjt:  -------RSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1617.4e-0436.21Show/hide
Query:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILLCDNIG
        H + +KR+LRYL+ T  YGL      T  ++ + DADWA +++  +S    L   N G
Subjt:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILLCDNIG
P92519 Uncharacterized mitochondrial protein AtMg008103.0e-0550Show/hide
Query:  VVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVR
        ++KR+LRY+KGT F+GL I  N+ L++ AF D+DWA     C S R
Subjt:  VVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVR
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.1e-0645.28Show/hide
Query:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILL
        H + +KRILRYL GT  +G+ ++  NTLS+ A+ DADWA + DD  S    ++
Subjt:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILL
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-0448.57Show/hide
Query:  ILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
        ++ CDN+GA  L ++P+FH+R KHI ID H++++Q
Subjt:  ILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.7e-0643.4Show/hide
Query:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILL
        H   +KR+LRYL GT  +G+ ++  NTLS+ A+ DADWA + DD  S    ++
Subjt:  HSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILL
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.6e-0445.71Show/hide
Query:  ILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
        ++ CDN+GA  L ++P+FH+R KHI +D H++++Q
Subjt:  ILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQ
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.5e-0442.86Show/hide
Query:  SILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQSTDDST
        ++L CDN  A  +A++ +FH RTKHI+ D H V+++S   +T
Subjt:  SILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQSTDDST
ATMG00810.1 DNA/RNA polymerases superfamily protein2.1e-0650Show/hide
Query:  VVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVR
        ++KR+LRY+KGT F+GL I  N+ L++ AF D+DWA     C S R
Subjt:  VVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTCATTCGAAGGTCGTGAAACGCATCCTACGATATCTCAAAGGTACAACCTTCTATGGTCTTCTAATTCAGCCAAACAACACCTTATCAATCATTGCCTTCTT
GGATGCAGACTGGGCCTCCAACATTGACGATTGCAAGTCTGTAAGATCGATTCTCTTGTGTGACAATATTGGAGCCGGTGCTCTTGCCTCCAGCCCAATGTTTCATACTC
GAACTAAACACATTGACATTGATGTTCATTATGTACAAGATCAGTCAACTGATGATTCAACTCATCATGACCCAGACCTATATAATGACATGGAGAAAGTTTGGAAAATG
CTTGGGAAGGCTTGGAGAAGAATCCAGACTTATTCTTTTTTCCGTTCGGTTATGTCTCATCCATTCACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTTCATTCGAAGGTCGTGAAACGCATCCTACGATATCTCAAAGGTACAACCTTCTATGGTCTTCTAATTCAGCCAAACAACACCTTATCAATCATTGCCTTCTT
GGATGCAGACTGGGCCTCCAACATTGACGATTGCAAGTCTGTAAGATCGATTCTCTTGTGTGACAATATTGGAGCCGGTGCTCTTGCCTCCAGCCCAATGTTTCATACTC
GAACTAAACACATTGACATTGATGTTCATTATGTACAAGATCAGTCAACTGATGATTCAACTCATCATGACCCAGACCTATATAATGACATGGAGAAAGTTTGGAAAATG
CTTGGGAAGGCTTGGAGAAGAATCCAGACTTATTCTTTTTTCCGTTCGGTTATGTCTCATCCATTCACATGA
Protein sequenceShow/hide protein sequence
MNVHSKVVKRILRYLKGTTFYGLLIQPNNTLSIIAFLDADWASNIDDCKSVRSILLCDNIGAGALASSPMFHTRTKHIDIDVHYVQDQSTDDSTHHDPDLYNDMEKVWKM
LGKAWRRIQTYSFFRSVMSHPFT