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Clc06G09740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr06:12897125..12897487
RNA-Seq ExpressionClc06G09740
SyntenyClc06G09740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG69253.1 hypothetical protein EZV62_004188 [Acer yangbiense]3.1e-2248.33Show/hide
Query:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSF-LKLKNILCVPSITKNLISVSKLAQDNNIVVEFYS
        +ATPET+ +  WYADSGA+N V  +   L+LK DY   E ++VG+G  L ISH+G   +PS +   + LK +L VP I KNL+SVS+L  DN++ +EF++
Subjt:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSF-LKLKNILCVPSITKNLISVSKLAQDNNIVVEFYS

Query:  DFCVVKDKTTGVELLKSTLK
        + C VKDK TG+E+L+  LK
Subjt:  DFCVVKDKTTGVELLKSTLK

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.0e-2551.69Show/hide
Query:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF
        AT +T+IN NWY DSGA+N +    + L+   +Y+  EK++VG+G SL IS+IG++ +    + L LKN+LCVP ITKNL+SVSKLAQDNN+ +EF+  +
Subjt:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF

Query:  CVVKDKTTGVELLKSTLK
        C +KDK TG  LL  T+K
Subjt:  CVVKDKTTGVELLKSTLK

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.2e-2352.29Show/hide
Query:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF
        ATP+T+++PNWY DSGA+N V    + +    +Y+  EKV VG+G+ L+IS++G++ +      L LKNILCVP I KNLISVSKLAQDN+I +EF+   
Subjt:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF

Query:  CVVKDKTTG
        C +KDK+TG
Subjt:  CVVKDKTTG

XP_031282138.1 uncharacterized protein LOC116140680 [Pistacia vera]2.4e-2247.11Show/hide
Query:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASS--FLKLKNILCVPSITKNLISVSKLAQDNNIVVEFY
        +ATP+T+ + +WY D GASN +  + + L  K  Y    KV VG+G ++ I+H G  +VPS +S   L+LKNILCVP I KNL+S+S++ +DNN++VEF+
Subjt:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASS--FLKLKNILCVPSITKNLISVSKLAQDNNIVVEFY

Query:  SDFCVVKDKTTGVELLKSTLK
        SD C+VKDK++   LL+ ++K
Subjt:  SDFCVVKDKTTGVELLKSTLK

XP_038895842.1 uncharacterized protein LOC120084010 [Benincasa hispida]6.2e-2353.78Show/hide
Query:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSD
        +A+ ET+ + N Y  SGAS  V +NP +L+    YT T+KV+V +G+ L+IS  G S + + S  L L NIL VP I K L+SVSKLA+DNNI+VEF+ D
Subjt:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSD

Query:  FCVVKDKTTGVELLKSTLK
        FCVVKDK +GV LLK  LK
Subjt:  FCVVKDKTTGVELLKSTLK

TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X16.0e-2452.29Show/hide
Query:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF
        ATP+T+++PNWY DSGA+N V    + +    +Y+  EKV VG+G+ L+IS++G++ +      L LKNILCVP I KNLISVSKLAQDN+I +EF+   
Subjt:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF

Query:  CVVKDKTTG
        C +KDK+TG
Subjt:  CVVKDKTTG

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-944.9e-2651.69Show/hide
Query:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF
        AT +T+IN NWY DSGA+N +    + L+   +Y+  EK++VG+G SL IS+IG++ +    + L LKN+LCVP ITKNL+SVSKLAQDNN+ +EF+  +
Subjt:  ATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDF

Query:  CVVKDKTTGVELLKSTLK
        C +KDK TG  LL  T+K
Subjt:  CVVKDKTTGVELLKSTLK

A0A803NU85 Uncharacterized protein3.5e-2451.26Show/hide
Query:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSD
        +A PE I + +WYADSGASN + ++P  +  K +Y   E++ +GDGS L I H+G   + S +S L L N+L VPSI+KNLISVSKL  DNN+ +EF+SD
Subjt:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSD

Query:  FCVVKDKTTGVELLKSTLK
         CVVK++ TG  +L+ TLK
Subjt:  FCVVKDKTTGVELLKSTLK

A0A803NUC9 Uncharacterized protein8.4e-2651.67Show/hide
Query:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSF-LKLKNILCVPSITKNLISVSKLAQDNNIVVEFYS
        +ATPE + + NWYADSGASN + ++P  +  K +Y   E++ +GDG  L ISH+G  ++ + SS  L LKN+L +PSI+KNLISVS+L  DNN+ +EF+S
Subjt:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSF-LKLKNILCVPSITKNLISVSKLAQDNNIVVEFYS

Query:  DFCVVKDKTTGVELLKSTLK
        DFC VKD++TG  +L  TLK
Subjt:  DFCVVKDKTTGVELLKSTLK

A0A803PYD1 Uncharacterized protein7.1e-2552.07Show/hide
Query:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSI--VPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFY
        +ATP+T+ + +WYADSGA+N +  + + L  K++Y   E+++VGDG+ LSI HIG ++  +P  S  L LK++L VPSITKNLIS+S L  DN++ VEF+
Subjt:  MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSI--VPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFY

Query:  SDFCVVKDKTTGVELLKSTLK
        SDFC VKD+TTG  +L+ TLK
Subjt:  SDFCVVKDKTTGVELLKSTLK

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.4e-1644.95Show/hide
Query:  NWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDFCVVKDKTTG
        NW  DSGA++ + ++ N L+L   YT  + V+V DGS++ ISH G + + + S  L L NIL VP+I KNLISV +L   N + VEF+     VKD  TG
Subjt:  NWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDFCVVKDKTTG

Query:  VELLKSTLK
        V LL+   K
Subjt:  VELLKSTLK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.8e-1641.28Show/hide
Query:  NWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDFCVVKDKTTG
        NW  DSGA++ + ++ N L+    YT  + V++ DGS++ I+H G + +P++S  L L  +L VP+I KNLISV +L   N + VEF+     VKD  TG
Subjt:  NWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDFCVVKDKTTG

Query:  VELLKSTLK
        V LL+   K
Subjt:  VELLKSTLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCCCTGAGACCATCATCAACCCCAATTGGTATGCTGACAGTGGAGCATCTAATTGTGTTGCAGCTAATCCCAATTACCTGAATCTGAAAATTGACTACACAAG
TACTGAAAAAGTCCTAGTAGGTGATGGCTCTTCACTATCTATTTCTCATATTGGTGATTCTATTGTGCCCTCTGCTTCTAGTTTTCTTAAATTGAAAAACATTTTATGTG
TTCCTTCAATTACAAAGAATCTTATCAGTGTTTCCAAGTTGGCCCAAGATAATAACATTGTTGTTGAATTTTATTCCGACTTCTGTGTGGTTAAGGACAAAACTACGGGG
GTAGAGCTACTGAAGAGCACTCTTAAGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCCCTGAGACCATCATCAACCCCAATTGGTATGCTGACAGTGGAGCATCTAATTGTGTTGCAGCTAATCCCAATTACCTGAATCTGAAAATTGACTACACAAG
TACTGAAAAAGTCCTAGTAGGTGATGGCTCTTCACTATCTATTTCTCATATTGGTGATTCTATTGTGCCCTCTGCTTCTAGTTTTCTTAAATTGAAAAACATTTTATGTG
TTCCTTCAATTACAAAGAATCTTATCAGTGTTTCCAAGTTGGCCCAAGATAATAACATTGTTGTTGAATTTTATTCCGACTTCTGTGTGGTTAAGGACAAAACTACGGGG
GTAGAGCTACTGAAGAGCACTCTTAAGTATTAG
Protein sequenceShow/hide protein sequence
MATPETIINPNWYADSGASNCVAANPNYLNLKIDYTSTEKVLVGDGSSLSISHIGDSIVPSASSFLKLKNILCVPSITKNLISVSKLAQDNNIVVEFYSDFCVVKDKTTG
VELLKSTLKY