CuGenDBv2

Gene ID	Clc06G09765
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Cytochrome f
Genome location	ClcChr06:12960863..12966558
RNA-Seq Expression	Clc06G09765
Synteny	Clc06G09765
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR008896 - Protein TIC214 IPR024094 - Cytochrome f large domain IPR036408 - Photosystem I PsaA/PsaB superfamily IPR036826 - Cytochrome f large domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QFQ45797.1 cytochrome f [Fordiophyton jinpingense]

5.7e-10

49.35

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Query:  FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        FFS + +   ++QP+++     S    + T   I++   +  ++GYENPREA GRIVCANCHLANKPVDIE+PQ VL
Subjt:  FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

QTT78306.1 cytochrome f [Strobilanthes biocullata]

7.5e-10

72.92

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T  +I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

QWE50234.1 cytochrome f [Biophytum sensitivum]

4.4e-10

77.78

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Query:  FINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        FI+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  FINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

YP_009699908.1 PetA [Hydrostachys polymorpha]

5.7e-10

67.27

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Query:  SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        S  T + T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

YP_010015707.1 cytochrome f [Rhipsalis baccifera]

2.0e-10

72.92

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T+ FI++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

TrEMBL top hits

e value

%identity

Alignment

A0A2I6SS48 Cytochrome f

3.6e-10

72.92

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T  +I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

A0A5C0QFL6 Cytochrome f

2.8e-10

67.27

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Query:  SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        S  T + T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

A0A5P8GTN6 Cytochrome f

2.8e-10

49.35

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Query:  FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        FFS + +   ++QP+++     S    + T   I++   +  ++GYENPREA GRIVCANCHLANKPVDIE+PQ VL
Subjt:  FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

A0A7G9IZ70 Cytochrome f

3.6e-10

72.92

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T  +I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

A0A7L8ZRG2 Cytochrome f

9.5e-11

72.92

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T+ FI++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

SwissProt top hits

e value

%identity

Alignment

A8W3D1 Cytochrome f

4.8e-12

77.27

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Query:  INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        I+S   +  + GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

B1A948 Cytochrome f

2.8e-12

70.83

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T+  I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

B1NWG3 Cytochrome f

2.8e-12

70.83

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T+  I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

Q06RB9 Cytochrome f

3.7e-12

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Query:  INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        I+S   +  ++GYENPREA GRIVCANCHLANKPVD+EVPQAVL
Subjt:  INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

Q68RZ3 Cytochrome f

2.8e-12

77.27

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Query:  INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Subjt:  INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

Arabidopsis top hits

e value

%identity

Alignment

AT2G07739.1 Ycf1 protein

1.0e-09

93.94

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Query:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
        +IINSVVVVGLYYGFLTTFSIGP YLFLLRARV
Subjt:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV

ATCG00540.1 photosynthetic electron transfer A

1.3e-12

68.75

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Query:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL
        T+  I+S   +  ++ YENPREA GRIVCANCHLANKPVDIEVPQ VL
Subjt:  TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL

ATCG01000.1 Ycf1 protein

2.1e-10

96.97

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Query:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
        +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Subjt:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV

ATCG01130.1 Ycf1 protein

2.1e-10

96.97

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Query:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
        +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Subjt:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV

ATMG00370.1 Ycf1 protein

2.1e-10

96.97

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Query:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
        +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Subjt:  QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV

Sequences

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CDS sequence

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ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGGGAAGACTCTGATCCTGTCACCTCC
ACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAA
CTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCC
TTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAA
ACGAAGTTTGGTAGATCGAGAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCAC
AAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTAACTCATTTTTCCAATTATGAAGCATGG
CTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCT
CTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGC
ATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAG
CAATAA

mRNA sequence

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Protein sequence

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MVVQCSFNMCLWSRSMKPKAQHLEGSFRGKTLILSPPRLEEEHMEQNHLHDLVDSLNWQQVSLALDKKQTHYGTITGNNKERMIWCQLKNNNFRVHPIRHPKPRRITIIS
FFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVLAFQSPGEELSCASINTEPIPIDLLTHFSNYEAW
LGDPTHIGPSAQIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVGSTTCVKLVKEYLQRTSVPPPPRTPVRFRHDTLFSYWENPSQRVALPFFLSGKEVSRACSLLLSPE
Q

Clc06G09765 (gene) of Watermelon (cordophanus) v2 genome