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Clc06G09930 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G09930
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr06:13396754..13397065
RNA-Seq ExpressionClc06G09930
SyntenyClc06G09930
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590295.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2680.26Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AKN+V+KMIK  SVPD+GTFNSLI+VICNSGEV FCINI+HEVCKLGLCPDINTYK  IP + KVGRIDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

KAG7023899.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2680.26Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AKN+V+KMIK  SVPD+GTFNSLI+VICNSGEV FCINI+HEVCKLGLCPDINTYK  IP + KVGRIDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

XP_004142520.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sativus]2.1e-2781.58Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK++V+KM K  SVPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP + KVGRIDEAF+LLH
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

XP_022151697.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Momordica charantia]1.4e-2680.26Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AKN+V+KM K  SVPDV TFNSLI VICNSGEV FCINI+HEVCKLGLCPDINTYK  +P + KVGRIDEAFKLLH
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

XP_038879743.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida]2.1e-2781.58Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK++V+KM K  SVPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP + KVGRIDEAF+LLH
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

TrEMBL top hitse value%identityAlignment
A0A0A0M105 Uncharacterized protein1.0e-2781.58Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK++V+KM K  SVPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP + KVGRIDEAF+LLH
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

A0A1S3CJ74 pentatricopeptide repeat-containing protein At5g18390, mitochondrial2.5e-2678.95Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK++V+KM K   VPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP + KVGRIDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

A0A5A7V4T7 Pentatricopeptide repeat-containing protein2.5e-2678.95Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK++V+KM K   VPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP + KVGRIDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

A0A6J1DE73 pentatricopeptide repeat-containing protein At5g18390, mitochondrial6.6e-2780.26Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AKN+V+KM K  SVPDV TFNSLI VICNSGEV FCINI+HEVCKLGLCPDINTYK  +P + KVGRIDEAFKLLH
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

A0A6J1H8G8 pentatricopeptide repeat-containing protein At5g18390, mitochondrial6.6e-2780.26Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AKN+V+KMIK  SVPD+GTFNSLI+VICNSGEV FCINI+HEVCKLGLCPDINTYK  IP + KVGRIDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

SwissProt top hitse value%identityAlignment
P0C894 Putative pentatricopeptide repeat-containing protein At2g021508.0e-0639.13Show/hide
Query:  KNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDE
        K   K MI   + P V T+N +ID +C  G+V     +F E+   GL PD  TY + I    KVGR+D+
Subjt:  KNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDE

Q0WVK7 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial1.6e-0638.24Show/hide
Query:  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL
        MI+    P+V T+ +LID +C  G++     + HE+ K+GL P+I TY + +    K G I+EA KL+
Subjt:  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL

Q94JX6 Pentatricopeptide repeat-containing protein At5g18390, mitochondrial9.8e-2059.21Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK +V KM KG  VPD+ TFN LI+ I  SGEV FCI +++  CKLGLC DI+TYK  IP   K+G+IDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

Q9CAN0 Pentatricopeptide repeat-containing protein At1g63130, mitochondrial8.0e-0632.26Show/hide
Query:  VTSGVETSSSC-------AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL
        VT G+  +  C       A +++KKM +G   P V  +N++ID +CN   V   +N+F E+   G+ P++ TY + I      GR  +A +LL
Subjt:  VTSGVETSSSC-------AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL

Q9SI78 Pentatricopeptide repeat-containing protein At1g627202.3e-0533.78Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKL
        A ++V KM+K    PDV T +SLI+  C    V+  I++  ++ ++G  PD+  Y   I  S K+G +++A +L
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKL

Arabidopsis top hitse value%identityAlignment
AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.1e-0738.24Show/hide
Query:  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL
        MI+    P+V T+ +LID +C  G++     + HE+ K+GL P+I TY + +    K G I+EA KL+
Subjt:  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL

AT1G05670.2 Pentatricopeptide repeat (PPR-like) superfamily protein1.1e-0738.24Show/hide
Query:  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL
        MI+    P+V T+ +LID +C  G++     + HE+ K+GL P+I TY + +    K G I+EA KL+
Subjt:  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL

AT1G63130.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.7e-0732.26Show/hide
Query:  VTSGVETSSSC-------AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL
        VT G+  +  C       A +++KKM +G   P V  +N++ID +CN   V   +N+F E+   G+ P++ TY + I      GR  +A +LL
Subjt:  VTSGVETSSSC-------AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL

AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.7e-0739.13Show/hide
Query:  KNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDE
        K   K MI   + P V T+N +ID +C  G+V     +F E+   GL PD  TY + I    KVGR+D+
Subjt:  KNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDE

AT5G18390.1 Pentatricopeptide repeat (PPR) superfamily protein6.9e-2159.21Show/hide
Query:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH
        AK +V KM KG  VPD+ TFN LI+ I  SGEV FCI +++  CKLGLC DI+TYK  IP   K+G+IDEAF+LL+
Subjt:  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGCGATGCGGACTCATTACTTATTGCTAGCAAGGCTAGTGGAGTTACTTCAGGGGTGGAGACTTCATCTTCATGTGCTAAGAATATTGTTAAAAAAATGATAAA
AGGAGCATCTGTGCCTGATGTAGGGACTTTTAATTCTCTGATTGATGTTATATGTAACTCTGGAGAAGTTTATTTTTGCATTAATATTTTTCATGAGGTGTGCAAGTTGG
GGCTTTGTCCTGATATAAATACCTACAAGAATTCAATTCCAACTAGTTTGAAAGTTGGTAGGATTGATGAAGCTTTCAAGCTTTTGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGCGATGCGGACTCATTACTTATTGCTAGCAAGGCTAGTGGAGTTACTTCAGGGGTGGAGACTTCATCTTCATGTGCTAAGAATATTGTTAAAAAAATGATAAA
AGGAGCATCTGTGCCTGATGTAGGGACTTTTAATTCTCTGATTGATGTTATATGTAACTCTGGAGAAGTTTATTTTTGCATTAATATTTTTCATGAGGTGTGCAAGTTGG
GGCTTTGTCCTGATATAAATACCTACAAGAATTCAATTCCAACTAGTTTGAAAGTTGGTAGGATTGATGAAGCTTTCAAGCTTTTGCATTGA
Protein sequenceShow/hide protein sequence
MCCDADSLLIASKASGVTSGVETSSSCAKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH