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Clc06G10030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlyco_18 domain-containing protein
Genome locationClcChr06:14034682..14037516
RNA-Seq ExpressionClc06G10030
SyntenyClc06G10030
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006032 - chitin catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0004568 - chitinase activity (molecular function)
GO:0008061 - chitin binding (molecular function)
InterPro domainsIPR001223 - Glycoside hydrolase family 18, catalytic domain
IPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035049.1 chitotriosidase-1-like [Cucumis melo var. makuwa]6.2e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

TYK03628.1 chitotriosidase-1-like [Cucumis melo var. makuwa]6.2e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

XP_004146700.1 class V chitinase CHIT5b [Cucumis sativus]1.1e-2457.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

XP_008443884.1 PREDICTED: chitotriosidase-1-like [Cucumis melo]6.2e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

XP_038878601.1 class V chitinase CHIT5b-like [Benincasa hispida]1.5e-2656.67Show/hide
Query:  QTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPGH----
        ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS YY + SWIS  VPRNKMVMGIP YGKS T+K+  VHG+GAP +   GPG     
Subjt:  QTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPGH----

Query:  -----KYAKSWTGSTIIVEI
             K     TG+T++ +I
Subjt:  -----KYAKSWTGSTIIVEI

TrEMBL top hitse value%identityAlignment
A0A0A0LWL0 Glyco_18 domain-containing protein5.2e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

A0A1S3B924 chitotriosidase-1-like3.0e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

A0A5A7T117 Chitotriosidase-1-like3.0e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

A0A5D3BXC7 Chitotriosidase-1-like3.0e-2557.66Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAPKLWNRGPG
        GAP +   GPG
Subjt:  GAPKLWNRGPG

A0A6J1EPX8 chitotriosidase-1-like2.0e-2459.22Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        A + + S F +   + ++     ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPRNKMVMGIP YGKS T+K+  VHG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GAP
        GAP
Subjt:  GAP

SwissProt top hitse value%identityAlignment
A0A072UR65 Class V chitinase CHIT5b1.3e-0940.91Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG
        I+++LDW+N++ ++  +   +  TGA    FDP  N+SV   + SWI   V   K+VMG+P YGKS  +++  VHG+GAP +   GPG
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG

A0A072VEP0 Class V chitinase CHIT5a1.6e-0737.97Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGA
        I+K LDW + +CFDYH + D   T  +  L+D    +S  + ++SWI   V   K+VMG+  YG++  +K+  V+G+GA
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGA

A0A1B1J8Z2 Class V chitinase CHIT59.1e-1136.27Show/hide
Query:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL
        + + F S+ S +    ++     I K LDW + +CFDY+ +     TG +  L+DP+ N+S  Y + SWI   VP  K+VMG+P YG++  +K+   HG+
Subjt:  AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGL

Query:  GA
        GA
Subjt:  GA

Q9D7Q1 Chitotriosidase-12.3e-0631.58Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFD--------PHMNLSVYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG
        I++SLD+IN++ +D+H S +   TG +  L+            N+    V  W+    P +K+++G+P YG+S T+ +S  +G+GAP      PG
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFD--------PHMNLSVYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG

U5N4E3 Nod factor hydrolase protein 15.3e-1144.32Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG
        I+K+LDW+N++ +D   S   + TGA   +FD   N+SV   ++SWI   V   K+VMG+P YGKS  +++  VHG+GAP   N GPG
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG

Arabidopsis top hitse value%identityAlignment
AT4G19720.1 Glycosyl hydrolase family protein with chitinase insertion domain4.5e-0536.36Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHM---NLSVYYVYSWISVSVPRNKMVMGIPPYG
        I K LDW+N+I +D++ S  T+  G    LFDP         Y +  WI   +P  K V+G P  G
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHM---NLSVYYVYSWISVSVPRNKMVMGIPPYG

AT4G19770.1 Glycosyl hydrolase family protein with chitinase insertion domain5.0e-0434.21Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHG
        IS+ LDW+NI  +D++    T  TG    L+      S    V  WI   +P  K V+G P YG + T+ +   HG
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHG

AT4G19800.1 Glycosyl hydrolase family protein with chitinase insertion domain3.4e-0530.85Show/hide
Query:  FSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGA
        + S   +G       IS SLDWIN++ +D++    +  TG    L+ P    S    V  W    +P  K V+G P YG + T+ +  V+G  A
Subjt:  FSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGA

AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain2.4e-0631.33Show/hide
Query:  AVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAP
        + ++ SLDW+N++ +D++    +  TG    LFDP            SWI   +P  K V+G P YG +  + N+  H   AP
Subjt:  AVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAP

AT4G19820.1 Glycosyl hydrolase family protein with chitinase insertion domain2.2e-0430.77Show/hide
Query:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMN--LSVYYVYSWISVSVPRNKMVMGIPPYG
        ++ SLDW+N++ +D+++S  +  T +   L+DP          V +W    +P  K V+G P YG
Subjt:  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMN--LSVYYVYSWISVSVPRNKMVMGIPPYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATCACACGCTTTTGCCGGGATTCAATTCCCTTCATCATTCTCATCCATGCAAATCAAAGGACAAACCCTCACAGGGGCAGTGATTTCGAAAAGTCTTGATTGGAT
TAACATTATATGCTTCGACTATCACAAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATGTTTATTCAT
GGATCTCCGTCAGCGTGCCTCGGAACAAGATGGTTATGGGTATTCCACCGTATGGCAAGTCTCGGACTATAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTG
TGGAATCGTGGACCCGGCCACAAGTATGCAAAATCGTGGACCGGGTCCACGATTATTGTTGAAATCGTGGACGGGGTCCACGATTTCACTGTCACGTTCACGCCCCCTGC
CATGCTGATGCTGAAGACTGCCACGTTGACTAGAAGACTACCACGTGAACAGAAGACTGCCAAGCTGACTCGCTGCATCCGTCTGCTGACCGGACTCATGGACCGGGTCC
ACAATTATCGAAATCATGGACGTGGTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATCACACGCTTTTGCCGGGATTCAATTCCCTTCATCATTCTCATCCATGCAAATCAAAGGACAAACCCTCACAGGGGCAGTGATTTCGAAAAGTCTTGATTGGAT
TAACATTATATGCTTCGACTATCACAAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATGTTTATTCAT
GGATCTCCGTCAGCGTGCCTCGGAACAAGATGGTTATGGGTATTCCACCGTATGGCAAGTCTCGGACTATAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTG
TGGAATCGTGGACCCGGCCACAAGTATGCAAAATCGTGGACCGGGTCCACGATTATTGTTGAAATCGTGGACGGGGTCCACGATTTCACTGTCACGTTCACGCCCCCTGC
CATGCTGATGCTGAAGACTGCCACGTTGACTAGAAGACTACCACGTGAACAGAAGACTGCCAAGCTGACTCGCTGCATCCGTCTGCTGACCGGACTCATGGACCGGGTCC
ACAATTATCGAAATCATGGACGTGGTCCATGA
Protein sequenceShow/hide protein sequence
MRSHAFAGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKL
WNRGPGHKYAKSWTGSTIIVEIVDGVHDFTVTFTPPAMLMLKTATLTRRLPREQKTAKLTRCIRLLTGLMDRVHNYRNHGRGP