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Clc06G10040 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10040
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCalcium-binding EF hand family protein
Genome locationClcChr06:14051932..14052692
RNA-Seq ExpressionClc06G10040
SyntenyClc06G10040
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ95513.1 calcium-binding EF hand family protein [Cucumis melo var. makuwa]1.9e-5485.27Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLD DNDGFLN NE+R GF  QPLE ELMDP+DDL EVVCHKF+VEK+GGIDE EFKSV+RDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKAK QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

XP_004142569.1 uncharacterized protein LOC101222885 [Cucumis sativus]8.3e-5888.37Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLDTDNDGFLN+NE+RVGFR  PLEFELMDP+DDL EVVCHKF VEK+GGIDE+EFKSVIRDILLAMAQG
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKA+ QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

XP_008462771.1 PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo]3.9e-5586.82Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLD DNDGFLN NE+R GF  QPLE ELMDP+DDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKAK QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

XP_010090267.1 uncharacterized protein LOC21389613 [Morus notabilis]4.6e-2450Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGF-RGQPLEFELMDP----MDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILL
        M +A LN++TVT FI D E FD CI +SF  LD D DG L+  E+RVGF R  PL   + DP     D+L++ +  +F  ++NG ID +EFKS+ ++++L
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGF-RGQPLEFELMDP----MDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILL

Query:  AMAQGIGNFPLQVALQQDSFLMKAVEHE
        AMA+GIG+ P+Q+A+ +DSFLM+AVEHE
Subjt:  AMAQGIGNFPLQVALQQDSFLMKAVEHE

XP_022158640.1 uncharacterized protein LOC111025096 [Momordica charantia]1.7e-3966.41Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTV +FINDT+IFD+C++ESF+KLD D DG LN NE+  GFR         DP+DDL + VC KF+VEK+GGI+E EFKSV+ +ILLA+A G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQ
        IGN PLQVALQQD  LMKAVEHE+AK +
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQ

TrEMBL top hitse value%identityAlignment
A0A0A0LYD8 Uncharacterized protein4.0e-5888.37Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLDTDNDGFLN+NE+RVGFR  PLEFELMDP+DDL EVVCHKF VEK+GGIDE+EFKSVIRDILLAMAQG
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKA+ QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

A0A1S3CI80 uncharacterized protein LOC1035010581.9e-5586.82Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLD DNDGFLN NE+R GF  QPLE ELMDP+DDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKAK QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

A0A5A7VAA7 Calcium-binding EF hand family protein1.9e-5586.82Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLD DNDGFLN NE+R GF  QPLE ELMDP+DDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKAK QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

A0A5D3B8A7 Calcium-binding EF hand family protein9.3e-5585.27Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTVTNFINDT+IFDDC++ESFKKLD DNDGFLN NE+R GF  QPLE ELMDP+DDL EVVCHKF+VEK+GGIDE EFKSV+RDILLAMA G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK
        IGNFPLQVALQQDSFLMKAVE EKAK QK
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQK

A0A6J1DWE2 uncharacterized protein LOC1110250968.5e-4066.41Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG
        MSVAFLNDTTV +FINDT+IFD+C++ESF+KLD D DG LN NE+  GFR         DP+DDL + VC KF+VEK+GGI+E EFKSV+ +ILLA+A G
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQG

Query:  IGNFPLQVALQQDSFLMKAVEHEKAKNQ
        IGN PLQVALQQD  LMKAVEHE+AK +
Subjt:  IGNFPLQVALQQDSFLMKAVEHEKAKNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54530.1 Calcium-binding EF hand family protein2.5e-1231.75Show/hide
Query:  LNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRG-QPLEFELM--DPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQGIG
        +   T+  F++DT+ F+    + F+ LD D +G L+ +E+R G      +E E+   D  D++Y  +  +F  +    +  K F+ +I +IL AMA+GIG
Subjt:  LNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRG-QPLEFELM--DPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQGIG

Query:  NFPLQVALQQDSFLMKAVEHEKAKNQ
        N P+ + +  D  +MKAV HE  + +
Subjt:  NFPLQVALQQDSFLMKAVEHEKAKNQ

AT2G41860.1 calcium-dependent protein kinase 149.6e-0428.79Show/hide
Query:  CIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSV
        CI+E F+ +DT N G + + E+ +G +    +  ++ P DD+ +++     V+K+G +D  EF ++
Subjt:  CIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSV

AT2G41860.2 calcium-dependent protein kinase 149.6e-0428.79Show/hide
Query:  CIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSV
        CI+E F+ +DT N G + + E+ +G +    +  ++ P DD+ +++     V+K+G +D  EF ++
Subjt:  CIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSV

AT2G44310.1 Calcium-binding EF-hand family protein4.9e-1633.09Show/hide
Query:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPL-----EFELMDPMDD---LYEVVCHKFHVEKNGGIDEKEFKSVIRD
        M V  ++ +TV +F++D E F   + E F  LD + DG L+ +E+R  F    L       +++ P D+   LY+ +  KF  +++G +D +EF+S ++ 
Subjt:  MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPL-----EFELMDPMDD---LYEVVCHKFHVEKNGGIDEKEFKSVIRD

Query:  ILLAMAQGIGNFPLQVAL--QQDSFLMKAVEHEKAKNQK
        I+LA+A G+G+ P+ + L    D+FL KA + E +K +K
Subjt:  ILLAMAQGIGNFPLQVAL--QQDSFLMKAVEHEKAKNQK

AT4G38810.2 Calcium-binding EF-hand family protein8.4e-0829.82Show/hide
Query:  LNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFR------GQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQ
        L+ + +   + + ++FD  + + F++LD D DG L+V E++          G P +    D  D +Y  V ++F       + + EFK V+ DILL MA 
Subjt:  LNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFR------GQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQ

Query:  GIGNFPLQVALQQD
        G+   P+ V L+ D
Subjt:  GIGNFPLQVALQQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGGCTTTTCTTAATGATACAACAGTGACAAATTTCATCAATGACACAGAAATATTTGACGATTGCATTAGAGAAAGTTTTAAGAAGCTTGACACAGACAATGA
TGGGTTTCTCAACGTGAATGAAATTCGAGTCGGGTTTCGGGGTCAGCCATTAGAATTTGAATTAATGGATCCTATGGACGATTTGTATGAGGTTGTTTGTCATAAGTTCC
ATGTGGAGAAAAATGGTGGAATTGATGAGAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCCCAAGGGATCGGAAACTTTCCTCTCCAAGTTGCACTT
CAGCAAGATAGTTTTCTTATGAAGGCCGTTGAACATGAAAAGGCCAAAAATCAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATTTTGTGGTACTGTTTCTCTTTCAAAATGAGTGTGGCTTTTCTTAATGATACAACAGTGACAAATTTCATCAATGACACAGAAATATTTGACGATTGCATTAGAGAAAG
TTTTAAGAAGCTTGACACAGACAATGATGGGTTTCTCAACGTGAATGAAATTCGAGTCGGGTTTCGGGGTCAGCCATTAGAATTTGAATTAATGGATCCTATGGACGATT
TGTATGAGGTTGTTTGTCATAAGTTCCATGTGGAGAAAAATGGTGGAATTGATGAGAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCCCAAGGGATC
GGAAACTTTCCTCTCCAAGTTGCACTTCAGCAAGATAGTTTTCTTATGAAGGCCGTTGAACATGAAAAGGCCAAAAATCAAAAATAGGAAATAGAATTCCAAGAAAATAT
ATCATTTTTATATAAATTATTAATTTACTTTCGATTTAAGTACTTCAATTTTTCTGTCAGTTGGATTTGGACTTTGTGATTGAACATATTTGATTATTAAAAGGTATAAT
ATTTTGTTTTTTTTTCCTTAACTGAGATTAATAGCATATCAAGACACAAGTAAGATTTAAACATATAACTTCGATCAAAACGTGGGGAAAGGTTTGAATTCCCACTCTGA
AAAAAAAAAGTTCTGGAAATTCAAGGTATCATTACTATATTGTAAGGAATAAGGTATGAGAATCATTTTGGACGATGTTACTCAAGTCTTAGGTATGAAAA
Protein sequenceShow/hide protein sequence
MSVAFLNDTTVTNFINDTEIFDDCIRESFKKLDTDNDGFLNVNEIRVGFRGQPLEFELMDPMDDLYEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAQGIGNFPLQVAL
QQDSFLMKAVEHEKAKNQK