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Clc06G10095 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10095
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP synthase subunit a
Genome locationClcChr06:14333644..14334123
RNA-Seq ExpressionClc06G10095
SyntenyClc06G10095
Gene Ontology termsGO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0015078 - proton transmembrane transporter activity (molecular function)
InterPro domainsIPR000568 - ATP synthase, F0 complex, subunit A
IPR035908 - ATP synthase, F0 complex, subunit A superfamily
IPR045083 - ATP synthase, F0 complex, subunit A, bacterial/mitochondria


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACD02170.1 ATPase subunit 6, partial [Humiria wurdackii]1.4e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIP+ FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRDP--------------SVAISQAHVSTISRCIYLNDVI
        KILSG AWTMLCMN+LFYFI DP               VAISQAHVSTIS CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRDP--------------SVAISQAHVSTISRCIYLNDVI

ATY70550.1 Atp6, partial [Solanum commersonii]3.1e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

AUS83467.1 Atp6, partial [Solanum tuberosum]3.1e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

YP_009430479.1 ATP synthase subunit 6 [Solanum lycopersicum]3.1e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

YP_009919617.1 ATP synthase subunit 6 [Solanum aethiopicum]3.1e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

TrEMBL top hitse value%identityAlignment
A0A290WL00 ATP synthase subunit a1.5e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

A0A2H4T3Q7 ATP synthase subunit a (Fragment)1.5e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

A0A7S9DFY2 ATP synthase subunit 61.5e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

A0A7S9DGW1 ATP synthase subunit 61.5e-3559.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+LFYFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

B2VPV2 ATP synthase subunit a (Fragment)6.8e-3659.75Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIP+ FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRDP--------------SVAISQAHVSTISRCIYLNDVI
        KILSG AWTMLCMN+LFYFI DP               VAISQAHVSTIS CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRDP--------------SVAISQAHVSTISRCIYLNDVI

SwissProt top hitse value%identityAlignment
P05499 ATP synthase subunit a2.0e-3759.12Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLFCNP GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LIPY FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI
        KILSGFAWTMLCMN+L YFI D                VAISQAHVSTI  CIYLND I
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLNDVI

P07925 ATP synthase subunit a1.0e-3356.05Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLF NP GM+P+SF V+SHFLITL                             GVPLPLAPFLVLL LI + FRA SSGIRL  N+M  HS V
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND
        KILSGFAWTML +NN+FYF+ D                VAISQAHVSTIS CIYLND
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND

P68526 ATP synthase subunit a1.6e-3457.32Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLF NP GM+P+SF V+SHFLITL                             GVPLPLAPFLVLL LI Y FRA S GIRL  N+M  HSLV
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND
        KILSGFAWTML +NN+FYFI D                VAISQAHVSTIS CIYLND
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND

P68527 ATP synthase subunit a1.6e-3457.32Show/hide
Query:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV
        +SVTFTFSLF NP GM+P+SF V+SHFLITL                             GVPLPLAPFLVLL LI Y FRA S GIRL  N+M  HSLV
Subjt:  MSVTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLV

Query:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND
        KILSGFAWTML +NN+FYFI D                VAISQAHVSTIS CIYLND
Subjt:  KILSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND

Q04654 ATP synthase subunit a1.6e-3458.06Show/hide
Query:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI
        VTFTF LFCN  GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LI Y FRA S GIRL  N+M  HSLVKI
Subjt:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI

Query:  LSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND
        LSGFAWTMLCMN+L YFI D                VAISQAHVSTIS CIYLND
Subjt:  LSGFAWTMLCMNNLFYFIRD--------------PSVAISQAHVSTISRCIYLND

Arabidopsis top hitse value%identityAlignment
AT2G07741.1 ATPase, F0 complex, subunit A protein2.0e-3254.14Show/hide
Query:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI
        VTF F LFCN  GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LI Y FRA S GIRL  N+M  HSLVKI
Subjt:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI

Query:  LSGFAWTMLCMNNLFYFI--------------RDPSVAISQAHVSTISRCIYLNDVI
        LSGFAWTMLCMN++FYFI               +  VAI QA+V TI  CIYLND I
Subjt:  LSGFAWTMLCMNNLFYFI--------------RDPSVAISQAHVSTISRCIYLNDVI

ATMG00410.1 ATPase subunit 6-12.0e-3254.14Show/hide
Query:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI
        VTF F LFCN  GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LI Y FRA S GIRL  N+M  HSLVKI
Subjt:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI

Query:  LSGFAWTMLCMNNLFYFI--------------RDPSVAISQAHVSTISRCIYLNDVI
        LSGFAWTMLCMN++FYFI               +  VAI QA+V TI  CIYLND I
Subjt:  LSGFAWTMLCMNNLFYFI--------------RDPSVAISQAHVSTISRCIYLNDVI

ATMG01170.1 ATPase, F0 complex, subunit A protein2.0e-3254.14Show/hide
Query:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI
        VTF F LFCN  GM+PYSF V+SHFLITL                             GVPLPLAPFLVLL LI Y FRA S GIRL  N+M  HSLVKI
Subjt:  VTFTFSLFCNPLGMLPYSFIVSSHFLITL-----------------------------GVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKI

Query:  LSGFAWTMLCMNNLFYFI--------------RDPSVAISQAHVSTISRCIYLNDVI
        LSGFAWTMLCMN++FYFI               +  VAI QA+V TI  CIYLND I
Subjt:  LSGFAWTMLCMNNLFYFI--------------RDPSVAISQAHVSTISRCIYLNDVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCACTTTTACATTTTCATTATTTTGCAATCCCTTGGGTATGCTACCTTATAGCTTCATAGTTTCAAGTCATTTTCTTATTACTTTAGGAGTCCCACTGCCATT
AGCACCTTTTTTAGTACTCCTTGGGCTAATCCCTTATTATTTTCGTGCATTTAGCTCAGGAATACGTTTAGTTACCAATGTGATGGTCGATCATAGTTTAGTAAAGATTT
TAAGTGGGTTCGCTTGGACTATGCTATGTATGAATAATCTTTTCTATTTCATACGAGATCCTAGTGTAGCTATATCACAAGCTCATGTTTCTACAATCTCAAGATGTATT
TACTTGAATGATGTTATTACCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTCACTTTTACATTTTCATTATTTTGCAATCCCTTGGGTATGCTACCTTATAGCTTCATAGTTTCAAGTCATTTTCTTATTACTTTAGGAGTCCCACTGCCATT
AGCACCTTTTTTAGTACTCCTTGGGCTAATCCCTTATTATTTTCGTGCATTTAGCTCAGGAATACGTTTAGTTACCAATGTGATGGTCGATCATAGTTTAGTAAAGATTT
TAAGTGGGTTCGCTTGGACTATGCTATGTATGAATAATCTTTTCTATTTCATACGAGATCCTAGTGTAGCTATATCACAAGCTCATGTTTCTACAATCTCAAGATGTATT
TACTTGAATGATGTTATTACCAATTAG
Protein sequenceShow/hide protein sequence
MSVTFTFSLFCNPLGMLPYSFIVSSHFLITLGVPLPLAPFLVLLGLIPYYFRAFSSGIRLVTNVMVDHSLVKILSGFAWTMLCMNNLFYFIRDPSVAISQAHVSTISRCI
YLNDVITN