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Clc06G10162 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10162
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionribosomal protein L5
Genome locationClcChr06:14900832..14901509
RNA-Seq ExpressionClc06G10162
SyntenyClc06G10162
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452179.1 hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]3.1e-4558.15Show/hide
Query:  LSLLGNHEEDSQTGLSGREVAVDIGNV--------------------------------------------------------FQFFDPFRDVSRQDPLL
        LSLLGNHEEDS+TGLSGR  AV IGNV                                                        F     + DVSRQDPLL
Subjt:  LSLLGNHEEDSQTGLSGREVAVDIGNV--------------------------------------------------------FQFFDPFRDVSRQDPLL

Query:  KLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        K NHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSN FL SNKDKGYVSDLAR+STLRGHGM
Subjt:  KLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

KAF4349909.1 hypothetical protein G4B88_002331 [Cannabis sativa]1.1e-5055.45Show/hide
Query:  MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ---------------------------------------------------------
        +THTNPTLLS I+ LSLLGNHEEDS+TGLSGR  AV IGNVF                                                          
Subjt:  MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ---------------------------------------------------------

Query:  ------------FFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDL
                     +  + DVSRQDPLLK NHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GKSFRSNPFL SNKDKGYVSDL
Subjt:  ------------FFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDL

Query:  ARKSTLRGHGM
        AR+STLRGHGM
Subjt:  ARKSTLRGHGM

QHE65829.1 ribosomal protein L5 [Castanospermum australe]5.4e-4284.31Show/hide
Query:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH
        +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGH
Subjt:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH

Query:  GM
        GM
Subjt:  GM

YP_009522804.1 ribosomal protein L5 [Styphnolobium japonicum]1.2e-4183.33Show/hide
Query:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH
        +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQ+GS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGH
Subjt:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH

Query:  GM
        GM
Subjt:  GM

YP_009913650.1 ribosomal protein L5 [Luffa acutangula]3.2e-4290.53Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFLESNKDKGYVSDLAR+STLRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

TrEMBL top hitse value%identityAlignment
A0A385CAQ4 Ribosomal protein L55.8e-4283.33Show/hide
Query:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH
        +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQ+GS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGH
Subjt:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH

Query:  GM
        GM
Subjt:  GM

A0A6B9QFQ7 Ribosomal protein L52.6e-4284.31Show/hide
Query:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH
        +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGH
Subjt:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH

Query:  GM
        GM
Subjt:  GM

A0A6J5TIQ9 Uncharacterized protein9.9e-4283.33Show/hide
Query:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH
        +F  +  + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGH
Subjt:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGH

Query:  GM
        GM
Subjt:  GM

A0A7D5Y005 Ribosomal protein L51.5e-4290.53Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DVSRQDPLLKLNHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFLESNKDKGYVSDLAR+STLRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

A0A7J6DWT2 ATP-synt_C domain-containing protein5.3e-5155.45Show/hide
Query:  MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ---------------------------------------------------------
        +THTNPTLLS I+ LSLLGNHEEDS+TGLSGR  AV IGNVF                                                          
Subjt:  MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQ---------------------------------------------------------

Query:  ------------FFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDL
                     +  + DVSRQDPLLK NHA VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGS+GKSFRSNPFL SNKDKGYVSDL
Subjt:  ------------FFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDL

Query:  ARKSTLRGHGM
        AR+STLRGHGM
Subjt:  ARKSTLRGHGM

SwissProt top hitse value%identityAlignment
P26860 60S ribosomal protein L5, mitochondrial1.3e-1958.59Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-RGSSGKSFRSNPFL---ESNKDKGYVSDLARKSTLRGHGM
        +  V R D LLK+N+  +MEVP  C+I  +PKAP +F IKN K AM+I  GQKFIQT+ RGS+GKSFR N F+   ES +D GYV+ LAR STLRGH M
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-RGSSGKSFRSNPFL---ESNKDKGYVSDLARKSTLRGHGM

P42793 60S ribosomal protein L5, mitochondrial1.5e-3983.16Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DV RQD LLKLN+A VMEVPG CEIR +PKAPY+FIIKNGK AM+IP GQKFIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

P49388 60S ribosomal protein L5, mitochondrial6.0e-3676.84Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DVSRQDPLL     T+ +  GSCEIR +P  PY+FIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

P51409 60S ribosomal protein L5, mitochondrial2.5e-2666.35Show/hide
Query:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKD-KGYVSDLARKSTLR
        +F  +  + DV RQD LLKLN+A VMEVPG C+I  +PK AP    IKNGK AM+I  GQK    QR S+GKSFRSNPFL SNKD KGYVSDLAR+STLR
Subjt:  VFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKD-KGYVSDLARKSTLR

Query:  GHGM
        GHGM
Subjt:  GHGM

Q05492 60S ribosomal protein L5, mitochondrial3.5e-3679.38Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DV RQD LLKLN A VMEVPG CEIR +PK  + YDFIIKNGK AM+I RGQKFIQT+RGS+GKSFRSNPFLESNKDKGYVSDLAR+S LRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

Arabidopsis top hitse value%identityAlignment
AT2G07725.1 Ribosomal L5P family protein4.7e-4487.37Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DVSRQDPLLK NHA VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM

ATMG00210.1 ribosomal protein L54.7e-4487.37Show/hide
Query:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
        + DVSRQDPLLK NHA VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Subjt:  FRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGA
TATTGGAAATGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACGTCAGGATCCATTGCTCAAACTAAATCACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGA
TAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGA
AAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGA
TATTGGAAATGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACGTCAGGATCCATTGCTCAAACTAAATCACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGA
TAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGA
AAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG
Protein sequenceShow/hide protein sequence
MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQFFDPFRDVSRQDPLLKLNHATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSG
KSFRSNPFLESNKDKGYVSDLARKSTLRGHGM