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Clc06G10165 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10165
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome b
Genome locationClcChr06:14902265..14903172
RNA-Seq ExpressionClc06G10165
SyntenyClc06G10165
Gene Ontology termsGO:0022904 - respiratory electron transport chain (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070469 - respirasome (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005797 - Cytochrome b/b6, N-terminal
IPR016174 - Di-haem cytochrome, transmembrane
IPR027387 - Cytochrome b/b6-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB9092651.1 hypothetical protein FH972_026962 [Carpinus fangiana]6.4e-2779.45Show/hide
Query:  TSLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        + +++ + LAMH+ PHVDLAFNSVEH+MRDVEGGWLL YMHANGAR+VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  TSLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

KAF1002736.1 hypothetical protein AG4045_014394 [Apium graveolens]3.2e-2681.69Show/hide
Query:  LLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        +++ + LAMHY PHVDLAFNSVEHIMRDVEGGW L YMHANGAR+V PWGQMSFWGATVI SLASAIP+VG
Subjt:  LLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

KAG6383917.1 hypothetical protein SASPL_156342 [Salvia splendens]8.3e-2792.19Show/hide
Query:  AMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        AMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGAR+VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  AMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

PNY07477.1 apocytochrome b [Trifolium pratense]1.2e-2870.53Show/hide
Query:  MLMGRESKWGT---------SLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR---HVLPWGQMSFWGATVIASLASAIPIVG
        ML G+ESKWGT          +++ + LAMHY PHVDLAFNSVEH+MRDVEGGWLL YMHANGA    +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  MLMGRESKWGT---------SLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR---HVLPWGQMSFWGATVIASLASAIPIVG

RDY13475.1 cytochrome b, partial [Mucuna pruriens]5.8e-2874.12Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        WG   L+ +C          LAMHY PHVDLAFNSVEH+MRDVEGGWLL YMHANGAR+VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

TrEMBL top hitse value%identityAlignment
A0A2K3NWQ7 Cytochrome b5.6e-2970.53Show/hide
Query:  MLMGRESKWGT---------SLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR---HVLPWGQMSFWGATVIASLASAIPIVG
        ML G+ESKWGT          +++ + LAMHY PHVDLAFNSVEH+MRDVEGGWLL YMHANGA    +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  MLMGRESKWGT---------SLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR---HVLPWGQMSFWGATVIASLASAIPIVG

A0A371IER7 Cytochrome b (Fragment)2.8e-2874.12Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        WG   L+ +C          LAMHY PHVDLAFNSVEH+MRDVEGGWLL YMHANGAR+VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

A0A4D8YGU4 Ubiquinol-cytochrome c reductase cytochrome b subunit4.0e-2792.19Show/hide
Query:  AMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        AMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGAR+VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  AMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

A0A5N6L5L2 Uncharacterized protein3.1e-2779.45Show/hide
Query:  TSLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        + +++ + LAMH+ PHVDLAFNSVEH+MRDVEGGWLL YMHANGAR+VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  TSLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

A0A6L5BAG8 Cytochrome b1.5e-2681.69Show/hide
Query:  LLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG
        +++ + LAMHY PHVDLAFNSVEHIMRDVEGGW L YMHANGAR+V PWGQMSFWGATVI SLASAIP+VG
Subjt:  LLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG

SwissProt top hitse value%identityAlignment
P07747 Cytochrome b6.9e-2448.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG

P09843 Cytochrome b6.9e-2448.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG

P0C524 Cytochrome b6.9e-2448.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG

P29757 Cytochrome b6.9e-2448.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG

P42792 Cytochrome b9.0e-2448.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG

Arabidopsis top hitse value%identityAlignment
AT2G07727.1 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal6.4e-2548.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG

ATMG00220.1 apocytochrome b6.4e-2548.84Show/hide
Query:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------
        WG   L+ +C          LAMHY PHVDLAFNSVEHIMRDVEGGWLL YMHANGA                                           
Subjt:  WGTSLLSSLC----------LAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGAR------------------------------------------

Query:  --HVLPWGQMSFWGATVIASLASAIPIVG
          +VLPWGQMSFWGATVI SLASAIP+VG
Subjt:  --HVLPWGQMSFWGATVIASLASAIPIVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAATGGGGCGGGAATCGAAGTGGGGGACCTCTCTCCTGTCAAGTCTTTGTTTAGCTATGCATTACGCACCTCATGTGGATCTAGCTTTCAACAGTGTAGAACACAT
TATGAGAGATGTTGAAGGGGGCTGGTTGCTCTGTTATATGCATGCTAATGGGGCAAGACACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCAACTGTAATTGCAA
GCTTAGCTAGTGCCATACCCATAGTAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAATGGGGCGGGAATCGAAGTGGGGGACCTCTCTCCTGTCAAGTCTTTGTTTAGCTATGCATTACGCACCTCATGTGGATCTAGCTTTCAACAGTGTAGAACACAT
TATGAGAGATGTTGAAGGGGGCTGGTTGCTCTGTTATATGCATGCTAATGGGGCAAGACACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCAACTGTAATTGCAA
GCTTAGCTAGTGCCATACCCATAGTAGGATAG
Protein sequenceShow/hide protein sequence
MLMGRESKWGTSLLSSLCLAMHYAPHVDLAFNSVEHIMRDVEGGWLLCYMHANGARHVLPWGQMSFWGATVIASLASAIPIVG