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Clc06G10170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr06:14926232..14929430
RNA-Seq ExpressionClc06G10170
SyntenyClc06G10170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6734747.1 hypothetical protein I3842_01G285500 [Carya illinoinensis]1.1e-1838.46Show/hide
Query:  MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKL---------STPLINDEDDELQ
        M+ FV+E+ +R    ++ +  I +   + G T++NLEVQ+ Q+AT++   Q+G FPS  E+NP+E+CKA+TLRSGK++         STP   +      
Subjt:  MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKL---------STPLINDEDDELQ

Query:  QEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
        Q E+E I+ D       + E+      I    N     P  LP+P++FQK+K+D QFSKFLDI KK+ I
Subjt:  QEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]1.1e-1838.46Show/hide
Query:  MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKL---------STPLINDEDDELQ
        M+ FV+E+ +R    ++ +  I +   + G T++NLEVQ+ Q+AT++   Q+G FPS  E+NP+E+CKA+TLRSGK++         STP   +      
Subjt:  MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKL---------STPLINDEDDELQ

Query:  QEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
        Q E+E I+ D       + E+      I    N     P  LP+P++FQK+K+D QFSKFLDI KK+ I
Subjt:  QEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

WP_217833143.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.0e-2479.35Show/hide
Query:  VTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQ-QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
        +TLRSGK+ +  ++ D D+EL QEEDEA I D   QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFP+KFQKKKIDAQFSKFLDI KKLEI
Subjt:  VTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQ-QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]7.1e-3487.76Show/hide
Query:  MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAI
        MLDFVKESRSRTTTLENSVQ IAST+QSQGK LQNLEVQLSQM TSLQTMQKGKFPSC EINPREECKAVTLRSGKKLSTPLI DED+E  QE D+ I
Subjt:  MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAI

WP_217833170.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.1e-2473.63Show/hide
Query:  TTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDV
        TTTLENSVQ IAST+QSQGK +Q+LEVQLSQM TSL TMQKGKFPSC + NP+EEC A+TLRSGK+L+  ++ D  DE  QEEDEAIIEDV
Subjt:  TTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDV

TrEMBL top hitse value%identityAlignment
A0A1J6ICW1 Uncharacterized protein (Fragment)3.6e-1543.38Show/hide
Query:  IQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLIN-DEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSN
        ++SQ   L+NLE+QLSQ+AT +    +G  PS  E NP+E  KA+ LRSG  L  P  N  E ++ +Q+ D+   E+V+     S+EKE  K    +  N
Subjt:  IQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLIN-DEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSN

Query:  STSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
         TSF P T+PFP+K +++K+D QF+KFL+ILK++ I
Subjt:  STSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

A0A1S4A646 uncharacterized protein LOC1077940972.0e-1340.74Show/hide
Query:  IQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNS
        ++SQG TL+N E++LSQ+ T +    +G  PS  E NP+E  KA+TLRSGK L  P  +      Q E+     ++++     S+EKE +K    +    
Subjt:  IQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNS

Query:  TSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
        TSF P T+PFP+K +++ +D QFSKFL+ILK++ I
Subjt:  TSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

A0A2P5BPI6 Uncharacterized protein3.9e-1435.67Show/hide
Query:  FVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQ
        F+ E+R +    E  +  I +   +   T+++LEVQ+ Q+A S++  Q GKFPS  E NP++ CKA+TLR+GK++    + +   ++ +E    ++E+  
Subjt:  FVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQ

Query:  QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
                K  SK +  S  ++   I   LP+P++FQKKK+DAQF+K L+I KKL I
Subjt:  QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

A0A314KJN0 Uncharacterized protein (Fragment)1.4e-1442.22Show/hide
Query:  IQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNS
        ++SQ   L+NLE+QLSQ+AT +    +G  PS  E NP+E  KA+ LRSG  L  P  N ++   Q ++     ++V+     S+EKE  K    +T N 
Subjt:  IQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNS

Query:  TSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI
        TSF P T+PFP+K +++K+D QF+KFL+ILK++ I
Subjt:  TSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEI

A0A6J1DU19 uncharacterized protein LOC1110243613.9e-1441.04Show/hide
Query:  FVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQ
        F+ E RSR + +EN V+ +   ++    +++N+EVQ+ Q+A +L TMQKGKFPS  E+ PRE CKAVTLRSGK+L  P      ++ + EE     E+ +
Subjt:  FVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQ

Query:  QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPK
         KE   KE   +      TS+  S  PN+LP+P+
Subjt:  QKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCCAAACAATTGCAAGCACCATTCAAAGCCAAGGTAAGACACTTCAAAACTTGGA
GGTTCAACTTAGTCAAATGGCAACTTCCCTCCAAACAATGCAAAAGGGTAAGTTCCCTAGTTGTCACGAGATAAACCCAAGGGAGGAGTGCAAGGCCGTGACTCTGAGGA
GTGGGAAAAAGCTATCCACTCCCTTGATCAATGATGAAGATGATGAGCTTCAGCAAGAAGAAGATGAAGCCATCATAGAGGATGTTCAACAAAAAGAGAGTGCATCTAAG
GAAAAGGAGAAATCAAAGTCCAACATAGGGAGTACTTCTAACTCTACTTCTTTTATCCCTAACACTTTACCTTTTCCTAAAAAATTTCAAAAGAAAAAGATTGATGCTCA
ATTTTCAAAGTTCTTAGACATACTCAAAAAGTTAGAAATTAAGTCCTTGGGAGACCATTCTTGGCCACCGGAAGGGCCTTCATCGATGTGCAAGATGGAAAGCTCACATT
CCGCCTTAACGATGAGGAGGAACTTGGTTTATCACACAAAGTACTCCTTACAACCAAGCCTGTTTGGTGGCTTCCCGCTTGCTCCCAGGCTTGCTCTTTCCTTGTTAGAT
GCTCTTATGCATGGGACAATGCATGATTCTAAGTTCGGAATGGGAGGTGTCTCTCGTACTTTTGTGTGTTTTCTCATCCTGCTATGCATGTTTGTGAAGAATGTTGCATT
GGATTTTGGCATCGCGGCAACGCCATCTCGGTGCCACGATGCTAAGATGAGTCCAGAACGTTGCGTTTGGGTTTTAGCACCGCGGCAGCGCCATCCAGGCGTCGCGGGCT
ATCCCAAATTTTGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCATATTCTTGCTCAGTTTTGATCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCCAAACAATTGCAAGCACCATTCAAAGCCAAGGTAAGACACTTCAAAACTTGGA
GGTTCAACTTAGTCAAATGGCAACTTCCCTCCAAACAATGCAAAAGGGTAAGTTCCCTAGTTGTCACGAGATAAACCCAAGGGAGGAGTGCAAGGCCGTGACTCTGAGGA
GTGGGAAAAAGCTATCCACTCCCTTGATCAATGATGAAGATGATGAGCTTCAGCAAGAAGAAGATGAAGCCATCATAGAGGATGTTCAACAAAAAGAGAGTGCATCTAAG
GAAAAGGAGAAATCAAAGTCCAACATAGGGAGTACTTCTAACTCTACTTCTTTTATCCCTAACACTTTACCTTTTCCTAAAAAATTTCAAAAGAAAAAGATTGATGCTCA
ATTTTCAAAGTTCTTAGACATACTCAAAAAGTTAGAAATTAAGTCCTTGGGAGACCATTCTTGGCCACCGGAAGGGCCTTCATCGATGTGCAAGATGGAAAGCTCACATT
CCGCCTTAACGATGAGGAGGAACTTGGTTTATCACACAAAGTACTCCTTACAACCAAGCCTGTTTGGTGGCTTCCCGCTTGCTCCCAGGCTTGCTCTTTCCTTGTTAGAT
GCTCTTATGCATGGGACAATGCATGATTCTAAGTTCGGAATGGGAGGTGTCTCTCGTACTTTTGTGTGTTTTCTCATCCTGCTATGCATGTTTGTGAAGAATGTTGCATT
GGATTTTGGCATCGCGGCAACGCCATCTCGGTGCCACGATGCTAAGATGAGTCCAGAACGTTGCGTTTGGGTTTTAGCACCGCGGCAGCGCCATCCAGGCGTCGCGGGCT
ATCCCAAATTTTGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCATATTCTTGCTCAGTTTTGATCTTTTAG
Protein sequenceShow/hide protein sequence
MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQQKESASK
EKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEIKSLGDHSWPPEGPSSMCKMESSHSALTMRRNLVYHTKYSLQPSLFGGFPLAPRLALSLLD
ALMHGTMHDSKFGMGGVSRTFVCFLILLCMFVKNVALDFGIAATPSRCHDAKMSPERCVWVLAPRQRHPGVAGYPKFCPFEFFSSFSPYSCSVLIF