; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G10203 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10203
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionYcf2 protein
Genome locationClcChr06:14933238..14934576
RNA-Seq ExpressionClc06G10203
SyntenyClc06G10203
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV66758.1 hypothetical protein [Tanacetum cinerariifolium]2.7e-0986.84Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS+KELYKRHCPSSL RYC I LSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
KAA0060780.1 ORF40s [Cucumis melo var. makuwa]5.5e-1089.47Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
KAF5786086.1 hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus]5.5e-1089.47Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
PUZ39272.1 hypothetical protein GQ55_9G274100 [Panicum hallii var. hallii]5.5e-1089.47Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
VAI72608.1 unnamed protein product [Triticum turgidum subsp. durum]2.6e-2082.81Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSIIGLL
        MI+HS KELYK+HCPSSL RYC IGLSPIVQDSPLLPP  S GRVS+ VWLIIQKDQLSIIGL+
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSIIGLL
TrEMBL top hitse value%identityAlignment
A0A0A9RWP6 Uncharacterized protein2.7e-1089.47Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
A0A2T7C7G7 Uncharacterized protein2.7e-1089.47Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
A0A446X8H3 Uncharacterized protein1.3e-2082.81Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSIIGLL
        MI+HS KELYK+HCPSSL RYC IGLSPIVQDSPLLPP  S GRVS+ VWLIIQKDQLSIIGL+
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSIIGLL
A0A5A7V0C9 ORF40s2.7e-1089.47Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
        MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP
K4D8K8 Uncharacterized protein5.0e-0986.49Show/hide
Query:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLP
        MI+H +KELYKRHCPSSL RYC IGLSPIVQDSPLLP
Subjt:  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLP
SwissProt top hitse value%identityAlignment
A6MM80 Protein Ycf23.1e-0890.62Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
        TSELNSFWLKNLFLVALEQLGDS+EEI GS S
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
A6MMG6 Protein Ycf23.1e-0890.62Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
        TSELNSFWLKNLFLVALEQLGDS+EEI GS S
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
Q0G9Q1 Protein Ycf22.4e-0887.5Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
        TSE NSFWLKNLFLVALEQLGDS+EEIWG  S
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
Q2QD30 Protein Ycf21.8e-0887.5Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
        T E NSFWLKNLFLVALEQLGDS+EEIWGS S
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
Q589A6 Protein Ycf21.8e-0887.5Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
        TSE N FWLKNLFLVALEQLGDS+EEIWGS S
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core2.5e-0890Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGS
        TSELNSFWLKNLFLVALEQLGD +EEI GS
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGS
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core2.5e-0890Show/hide
Query:  TSELNSFWLKNLFLVALEQLGDSVEEIWGS
        TSELNSFWLKNLFLVALEQLGD +EEI GS
Subjt:  TSELNSFWLKNLFLVALEQLGDSVEEIWGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCC
CCCTCGTGCGAGTACAGGCCGTGTCTCTATCCTAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGTTGGTATCAGACATGGTTGAAGCCACCAAAA
AAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAACTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACA
TCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCCGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCC
CCCTCGTGCGAGTACAGGCCGTGTCTCTATCCTAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGCTTGTTGGTATCAGACATGGTTGAAGCCACCAAAA
AAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAACTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACA
TCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCCGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA
Protein sequenceShow/hide protein sequence
MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSILVWLIIQKDQLSIIGLLVSDMVEATKKGRPLFKPKKVRHLSYEEVVGTGLRTMERSDPLFDQT
SELNSFWLKNLFLVALEQLGDSVEEIWGSVSST