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Clc06G10207 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10207
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCytochrome c oxidase subunit 2
Genome locationClcChr06:14934982..14935317
RNA-Seq ExpressionClc06G10207
SyntenyClc06G10207
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:1902600 - proton transmembrane transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070469 - respirasome (cellular component)
GO:0004129 - cytochrome-c oxidase activity (molecular function)
GO:0005507 - copper ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011759 - Cytochrome C oxidase subunit II, transmembrane domain
IPR036257 - Cytochrome C oxidase subunit II, transmembrane domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS28310.1 hypothetical protein Acr_00g0001100 [Actinidia rufa]5.5e-2670.33Show/hide
Query:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG---------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MPKDSHA+LGWTN     R P  GEQE+VS F GG         +MIVL+WLFLT  PCDA EPWQLGSQDAATP MQGIIDLHHDIFFFL
Subjt:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG---------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

KAA0050490.1 cytochrome c oxidase subunit 2 [Cucumis melo var. makuwa]2.9e-2775.29Show/hide
Query:  SHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIF
        SHA+LGW NPTG+FRLP LGEQE+VS FF G          KMIVLKWLFLT  PCDA EPWQLGSQDAATPMMQGIIDLHHD F
Subjt:  SHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIF

KAB9173090.1 hypothetical protein FH972_026993 [Carpinus fangiana]8.8e-3276.09Show/hide
Query:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MPKDSHA+LGWTNPTG+FRL ELGEQE+VS FF G          +MIVL+WLFLT  PCDA EPWQLGSQDAATPMMQGI+DLHHDIFFFL
Subjt:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

KAF3452243.1 hypothetical protein FNV43_RR08341 [Rhamnella rubrinervis]2.7e-2868.75Show/hide
Query:  LSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        LS +  K+SH +LGWT+PTG+FRLPE  EQE+VS  F G          KMIVL+WLFLT +PCDA EPWQLGSQDAATPMMQGI+DLHHDIFFFL
Subjt:  LSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

XP_015868752.1 uncharacterized protein LOC107406162 [Ziziphus jujuba]4.8e-3066.67Show/hide
Query:  GSEALAISV-FFLSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDL
        GS++L  S    LS +  K+SH +LGWT+PTG+FRLPELGEQE+VS  F G          KMIVL+WLFLT  PCDA EPWQLGSQDAATPMMQGI+DL
Subjt:  GSEALAISV-FFLSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDL

Query:  HHDIFFFL
        HHDIFFFL
Subjt:  HHDIFFFL

TrEMBL top hitse value%identityAlignment
A0A5A7U5K2 Cytochrome c oxidase subunit 21.4e-2775.29Show/hide
Query:  SHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIF
        SHA+LGW NPTG+FRLP LGEQE+VS FF G          KMIVLKWLFLT  PCDA EPWQLGSQDAATPMMQGIIDLHHD F
Subjt:  SHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIF

A0A5N6L5W4 Cytochrome c oxidase subunit 24.3e-3276.09Show/hide
Query:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MPKDSHA+LGWTNPTG+FRL ELGEQE+VS FF G          +MIVL+WLFLT  PCDA EPWQLGSQDAATPMMQGI+DLHHDIFFFL
Subjt:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

A0A6P3YWJ4 Cytochrome c oxidase subunit 22.3e-3066.67Show/hide
Query:  GSEALAISV-FFLSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDL
        GS++L  S    LS +  K+SH +LGWT+PTG+FRLPELGEQE+VS  F G          KMIVL+WLFLT  PCDA EPWQLGSQDAATPMMQGI+DL
Subjt:  GSEALAISV-FFLSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG----------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDL

Query:  HHDIFFFL
        HHDIFFFL
Subjt:  HHDIFFFL

A0A7J0D6G2 Cytochrome c oxidase subunit 22.7e-2670.33Show/hide
Query:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG---------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MPKDSHA+LGWTN     R P  GEQE+VS F GG         +MIVL+WLFLT  PCDA EPWQLGSQDAATP MQGIIDLHHDIFFFL
Subjt:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG---------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

A0A7J0D8B7 Cytochrome c oxidase subunit 22.7e-2670.33Show/hide
Query:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG---------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MPKDSHA+LGWTN     R P  GEQE+VS F GG         +MIVL+WLFLT  PCDA EPWQLGSQDAATP MQGIIDLHHDIFFFL
Subjt:  MPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGG---------KMIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

SwissProt top hitse value%identityAlignment
P05491 Cytochrome c oxidase subunit 22.7e-1588.1Show/hide
Query:  KWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        +WLFLT  PCDA EPWQLG QDAATPMMQGIIDLHHDIFFFL
Subjt:  KWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

P08744 Cytochrome c oxidase subunit 29.2e-1688.37Show/hide
Query:  LKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        L+WLFLT  PCDA EPWQLG QDAATPMMQGIIDLHHDIFFFL
Subjt:  LKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

P92559 Uncharacterized mitochondrial protein AtMg012804.4e-1891.3Show/hide
Query:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MIVLKWLFLT +PCDA EPWQLGSQDAATP+MQGIIDLHHDIFFFL
Subjt:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

P93285 Cytochrome c oxidase subunit 26.4e-1786.96Show/hide
Query:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MIVLKWLF T +PCDA EPWQLG QDAATP+MQGIIDLHHDIFFFL
Subjt:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

P98012 Cytochrome c oxidase subunit 24.1e-1684.78Show/hide
Query:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MIV +WLF T  PCDA EPWQLG QDAATPMMQGIIDLHHDIFFFL
Subjt:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

Arabidopsis top hitse value%identityAlignment
AT2G07695.1 Cytochrome C oxidase subunit II-like, transmembrane domain3.1e-1991.3Show/hide
Query:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MIVLKWLFLT +PCDA EPWQLGSQDAATP+MQGIIDLHHDIFFFL
Subjt:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

ATMG00160.1 cytochrome oxidase 23.1e-1991.3Show/hide
Query:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MIVLKWLFLT +PCDA EPWQLGSQDAATP+MQGIIDLHHDIFFFL
Subjt:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL

ATMG01280.1 Cytochrome C oxidase subunit II-like, transmembrane domain3.1e-1991.3Show/hide
Query:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL
        MIVLKWLFLT +PCDA EPWQLGSQDAATP+MQGIIDLHHDIFFFL
Subjt:  MIVLKWLFLT-TPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGTGTAGGAGATAGGCGAAGCGGTAGCGAAGCTCTAGCCATTTCAGTCTTCTTTTTATCCTTAGCAATGCCCAAAGACTCCCATGCCTATCTTGGCTGGACTAA
CCCAACCGGCAATTTCCGTCTTCCTGAATTGGGAGAGCAAGAACGAGTCTCTCCTTTTTTTGGGGGCAAAATGATTGTTCTAAAATGGCTATTCCTTACTACTCCTTGTG
ATGCAGTGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGGATAATAGACTTACATCATGATATCTTTTTCTTCCTCAAGGACGAATTGAAT
AAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGTGTAGGAGATAGGCGAAGCGGTAGCGAAGCTCTAGCCATTTCAGTCTTCTTTTTATCCTTAGCAATGCCCAAAGACTCCCATGCCTATCTTGGCTGGACTAA
CCCAACCGGCAATTTCCGTCTTCCTGAATTGGGAGAGCAAGAACGAGTCTCTCCTTTTTTTGGGGGCAAAATGATTGTTCTAAAATGGCTATTCCTTACTACTCCTTGTG
ATGCAGTGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGGATAATAGACTTACATCATGATATCTTTTTCTTCCTCAAGGACGAATTGAAT
AAGTGA
Protein sequenceShow/hide protein sequence
MVGVGDRRSGSEALAISVFFLSLAMPKDSHAYLGWTNPTGNFRLPELGEQERVSPFFGGKMIVLKWLFLTTPCDAVEPWQLGSQDAATPMMQGIIDLHHDIFFFLKDELN
K