; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G10510 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10510
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA-binding protein 42-like
Genome locationClcChr06:15665939..15669233
RNA-Seq ExpressionClc06G10510
SyntenyClc06G10510
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0017069 - snRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034215 - RBM42, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598941.1 RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]4.1e-8770.85Show/hide
Query:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA
        APSS S SQF YS G  FP+PFHLQQSAP  A     +P                   APA A Y LPQY     +QAQQLF +DAQ ITPEALE VK A
Subjt:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA

Query:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM
        LA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP DL AALKEM
Subjt:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM

Query:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++HK
Subjt:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

XP_022929768.1 RNA-binding protein 42-like [Cucurbita moschata]4.1e-8770.85Show/hide
Query:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA
        APSS S SQF YS G  FP+PFHLQQSAP  A     +P                   APA A Y LPQY     +QAQQLF +DAQ ITPEALE VK A
Subjt:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA

Query:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM
        LA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP DL AALKEM
Subjt:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM

Query:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++HK
Subjt:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

XP_023545858.1 RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]4.1e-8770.85Show/hide
Query:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA
        APSS S SQF YS G  FP+PFHLQQSAP  A     +P                   APA A Y LPQY     +QAQQLF +DAQ ITPEALE VK A
Subjt:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA

Query:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM
        LA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP DL AALKEM
Subjt:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM

Query:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++HK
Subjt:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

XP_038877084.1 RNA-binding protein 42-like [Benincasa hispida]4.7e-11590.25Show/hide
Query:  MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKA
        MAAPCFWAPS+ISSSQFAYS GPCFPVPFHLQQSAP+ AAA TTAPV APAAA YPLPQY     +QAQQLF KDAQIITPEALE VKVALARDEMEHKA
Subjt:  MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKA

Query:  DTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPI
        +TKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFS+FPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKE NGKYVGNRPI
Subjt:  DTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPI

Query:  KLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVH
        KLRKSKWKDRIDYEAL +LKNKTQKNWKV+K+SV+H
Subjt:  KLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVH

XP_038890923.1 RNA-binding protein 42-like [Benincasa hispida]1.1e-8770.68Show/hide
Query:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------------AATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVK
        APSS S SQF YS G  FP+PFHLQQSAP +AA                    A+  P  APA A+Y LPQY     +QAQQLF +DAQ ITPEALE VK
Subjt:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAA-------------------AATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVK

Query:  VALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK
         ALA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP DL  ALK
Subjt:  VALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK

Query:  EMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        EMNGKYVGNRPIKLRKS WK+R DYEAL R KN TQK  K+ K+S++HK
Subjt:  EMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

TrEMBL top hitse value%identityAlignment
A0A0A0LH39 RRM domain-containing protein1.9e-8568.73Show/hide
Query:  MAAPCFWAPSSISS---SQFAYSAGPCFPVPFHLQQSAPVSA-------------------AAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI
        MA P   APSS SS   SQF YS G  FP+PFHLQQSAP  A                     A   P  AP  A+Y LPQY     +QAQQLF +DAQ 
Subjt:  MAAPCFWAPSSISS---SQFAYSAGPCFPVPFHLQQSAPVSA-------------------AAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI

Query:  ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT
        ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+
Subjt:  ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT

Query:  NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R KN TQK  K+ K+S++HK
Subjt:  NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

A0A6J1D848 RNA-binding protein 423.4e-8768.73Show/hide
Query:  MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAAA-------------------ATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI
        MA P   APS+ SSS   QF +S    FP+PFHLQQSAP +AAA                   A+  P  AP  A+Y LPQY     +QAQQLF +DAQ 
Subjt:  MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAAA-------------------ATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI

Query:  ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT
        ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS++FSRFPSFNMARVVRDKRTGKTKGYGFVSF+
Subjt:  ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT

Query:  NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NP DL AALKEMNGKYVGNRPIKLRKS WK+R DYEALER KN TQK  K+ K+S++HK
Subjt:  NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

A0A6J1ET57 RNA-binding protein 42-like2.0e-8770.85Show/hide
Query:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA
        APSS S SQF YS G  FP+PFHLQQSAP  A     +P                   APA A Y LPQY     +QAQQLF +DAQ ITPEALE VK A
Subjt:  APSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVA-----------------APAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA

Query:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM
        LA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP DL AALKEM
Subjt:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM

Query:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++HK
Subjt:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

A0A6J1FBP0 RNA-binding protein 42-like4.9e-8668.73Show/hide
Query:  MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAA-------------------AATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI
        MA P F APS+ SSS   QF YS G  FP+PFHLQQSAP + A                    A+  P  APA A Y LPQY     +QAQQLF +DAQ 
Subjt:  MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAA-------------------AATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI

Query:  ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT
        ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ WEDPTL +WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+
Subjt:  ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT

Query:  NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R KN TQK  K+ K+S++HK
Subjt:  NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

A0A6J1KCL6 RNA-binding protein 42-like1.3e-8670.45Show/hide
Query:  APSSISSSQFAYSAGPCFPVPFHLQQSA-----------------PVSAAAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA
        APSS S SQF YS G  FP+PFHLQQSA                 P +     T+   APA A Y LPQY     +QAQQLF +DAQ ITPEALE VK A
Subjt:  APSSISSSQFAYSAGPCFPVPFHLQQSA-----------------PVSAAAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVA

Query:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM
        LA  E+EHKA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP DL AALKEM
Subjt:  LARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM

Query:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++HK
Subjt:  NGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

SwissProt top hitse value%identityAlignment
A2VDB3 RNA-binding protein 422.3e-4048.77Show/hide
Query:  GPCFPVPFHLQQSAP------VSAAAA--TTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI------ITPEALEGVKVALARDEMEHKADTKRKAI
        GP  P P  + QSAP      + AA    T  PV  P   I   P    +  E+ + L +++  I      I P   E V   +  D+ + K +  ++ I
Subjt:  GPCFPVPFHLQQSAP------VSAAAA--TTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQI------ITPEALEGVKVALARDEMEHKADTKRKAI

Query:  PRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKW
         R AAG  WED +L +W  +D+R+FCGDLGNEVNDD+L+RAFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A +EMNGKYVG+RPIKLRKS+W
Subjt:  PRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKW

Query:  KDR
        KDR
Subjt:  KDR

Q0P5L0 RNA-binding protein 429.4e-4264.84Show/hide
Query:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD
        ALE V   L+ D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D
Subjt:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD

Query:  LTAALKEMNGKYVGNRPIKLRKSKWKDR
           A++EMNGKYVG+RPIKLRKS WKDR
Subjt:  LTAALKEMNGKYVGNRPIKLRKSKWKDR

Q6AXT7 RNA-binding protein 421.2e-4164.84Show/hide
Query:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD
        ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D
Subjt:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD

Query:  LTAALKEMNGKYVGNRPIKLRKSKWKDR
           A++EMNGKYVG+RPIKLRKS WKDR
Subjt:  LTAALKEMNGKYVGNRPIKLRKSKWKDR

Q91V81 RNA-binding protein 421.2e-4164.84Show/hide
Query:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD
        ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D
Subjt:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD

Query:  LTAALKEMNGKYVGNRPIKLRKSKWKDR
           A++EMNGKYVG+RPIKLRKS WKDR
Subjt:  LTAALKEMNGKYVGNRPIKLRKSKWKDR

Q9BTD8 RNA-binding protein 421.2e-4164.84Show/hide
Query:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD
        ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVNDD+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D
Subjt:  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD

Query:  LTAALKEMNGKYVGNRPIKLRKSKWKDR
           A++EMNGKYVG+RPIKLRKS WKDR
Subjt:  LTAALKEMNGKYVGNRPIKLRKSKWKDR

Arabidopsis top hitse value%identityAlignment
AT1G17370.1 oligouridylate binding protein 1B2.5e-1343.84Show/hide
Query:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK
        + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ E+ GK++G+R I+
Subjt:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK

AT1G17370.2 oligouridylate binding protein 1B2.5e-1343.84Show/hide
Query:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK
        + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ E+ GK++G+R I+
Subjt:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK

AT1G54080.1 oligouridylate-binding protein 1A5.0e-1447.95Show/hide
Query:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK
        + +F GDL  EV D  L  +FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ EMNGK+V +R I+
Subjt:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK

AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-7963.49Show/hide
Query:  PCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVAA-PAAAIYPLP------QYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEM
        P   + SS SSSQ+ Y+A   +  P+   Q    + + A  APVA+ P A +YP P       Y     +QA QLF +DAQ ITPEALE VK ALA  E 
Subjt:  PCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVAA-PAAAIYPLP------QYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEM

Query:  EHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVG
        EHKA+TK++AIPRKAAGQ WEDPTL++WPENDYRLFCGDLGNEVNDDVLS+AF+RFP+FNMA+V+RDKRTGKTKGYGFVSF NP DL AALKEMNGKYVG
Subjt:  EHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVG

Query:  NRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
        NRPIKLRKS WK+R D EA ER K+ + K  K  K+S++HK
Subjt:  NRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK

AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-1446.58Show/hide
Query:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK
        + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ EMNGK++ +R I+
Subjt:  YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGT
TTCCGCCGCTGCTGCAACCACGGCCCCTGTGGCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGCGCAGCAGTTGTTTCATA
AAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAA
GCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCG
AGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCA
CTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAG
AATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGA
mRNA sequenceShow/hide mRNA sequence
AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGT
CTGAATTCTCCGAATCTCAAATCCCCATTTCAGCTTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATT
TCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTGGCTGC
TCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGG
GTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCT
GATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAG
GGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTG
GGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGA
AGTGTGGTGCATAAGTGAAAAGAAGGAGCATTGATGAAAATTCTCACGTATCGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGTCTCTTTGTTTCT
TACCTGTTTGTTTCCTGAAATTTTAGATATATTTAATATCTTACACAATTTTAACATCTGTTTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCATTC
ATTGTTTTCAAATATGTGGTTTGTAATAG
Protein sequenceShow/hide protein sequence
MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVAAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK
AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLK
NKTQKNWKVEKRSVVHK