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Clc06G10550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S acidic ribosomal protein P1-like
Genome locationClcChr06:15962491..15962820
RNA-Seq ExpressionClc06G10550
SyntenyClc06G10550
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597015.1 60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2671.17Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKE
        MSVGE+ACSYAALILYDDNI +TAEK+A L                  LAEK NIGDLI+NVGAGGG    A+VPAGG AGGAAAAAAPPP+EKKEEPKE
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKE

Query:  ESDDDMGFSLF
        ESDDDMGFSLF
Subjt:  ESDDDMGFSLF

XP_004133766.1 60S acidic ribosomal protein P1 [Cucumis sativus]5.3e-2771.43Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGGASV----PAGGAAGGAAAAAAPPPKEKKEEPK
        MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK +IGDLILNVGAGGGA+V    PAGGAAGG AAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGGASV----PAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

XP_008437779.1 PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]6.9e-2771.43Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK
        MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK NIGDLILNVGAGGG    A+VPAGGAA G AAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

XP_022144008.1 60S acidic ribosomal protein P1-like [Momordica charantia]9.1e-2770.54Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK
        MS  E+ACSYAA+ILYDD I ITAEKIAAL                   LAEK NIGDLI+NVGAGGG    A+VPAGGAAGGAAAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

XP_038883955.1 60S acidic ribosomal protein P1-like [Benincasa hispida]1.2e-2671.43Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIA-------------------ALLAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK
        MS GE+ACSYAALILYDDNI ITAEKIA                   A LAEK NIGDLILNVGAGGG    A+VPA G AGGAAAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIA-------------------ALLAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

TrEMBL top hitse value%identityAlignment
A0A0A0L5M7 Uncharacterized protein2.6e-2771.43Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGGASV----PAGGAAGGAAAAAAPPPKEKKEEPK
        MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK +IGDLILNVGAGGGA+V    PAGGAAGG AAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGGASV----PAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

A0A1S3AUG9 60S acidic ribosomal protein P1-like3.4e-2771.43Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK
        MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK NIGDLILNVGAGGG    A+VPAGGAA G AAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

A0A5D3DB57 60S acidic ribosomal protein P1-like3.4e-2771.43Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK
        MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK NIGDLILNVGAGGG    A+VPAGGAA G AAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

A0A6J1CS45 60S acidic ribosomal protein P1-like4.4e-2770.54Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK
        MS  E+ACSYAA+ILYDD I ITAEKIAAL                   LAEK NIGDLI+NVGAGGG    A+VPAGGAAGGAAAAAAPPP+EKKEEPK
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPK

Query:  EESDDDMGFSLF
        EESDDDMGFSLF
Subjt:  EESDDDMGFSLF

A0A6J1ICK4 60S acidic ribosomal protein P1-like1.3e-2671.17Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKE
        MSVGE+ACSYAALILYDDNI +TAEK+A L                  LAEK NIGDLI+NVGAGGG    A+VPAGG AGGAAAAAAPPP+EKKEEPKE
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKE

Query:  ESDDDMGFSLF
        ESDDDMGFSLF
Subjt:  ESDDDMGFSLF

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-25.7e-1650.91Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGAS----VPAGGAAGGAAAAAAPPPKEKKEEPKEE
        +VGE+ACSYA +IL D+ I IT++KIA L                  +AEK N+ DLI+NVGAGGG        A  AA G AAAAAP  +EKK+EP EE
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGAS----VPAGGAAGGAAAAAAPPPKEKKEEPKEE

Query:  SDDDMGFSLF
        SD D+GF LF
Subjt:  SDDDMGFSLF

P50344 60S acidic ribosomal protein P13.7e-1551.38Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIAALLA-------------------EKCNIGDLILNVGAGGGASVPAGG-AAGGAAAAAAPPPKEKKEEPKEES
        MS  E+A SYAALIL D+ + ITA+K+ AL++                   E  ++ DL+LNVG+GGGA+  AGG AAGGAAA    P +EK EE KEES
Subjt:  MSVGEVACSYAALILYDDNILITAEKIAALLA-------------------EKCNIGDLILNVGAGGGASVPAGG-AAGGAAAAAAPPPKEKKEEPKEES

Query:  DDDMGFSLF
        DDDMGF LF
Subjt:  DDDMGFSLF

P52855 60S acidic ribosomal protein P16.5e-2061.11Show/hide
Query:  MSVGEVACSYAALILYDDNILITAEKIA------------------ALLAEKCNIGDLILNVGAGGGAS-VPAGGAAGGAAAAAAPPPKEKKEEPKEESD
        M+ GE+AC YAALIL DD I ITAEKIA                  A L EK N+ DLIL+VG+GGGA+ V A   AGGAAAAAAP  +EKKEE KEESD
Subjt:  MSVGEVACSYAALILYDDNILITAEKIA------------------ALLAEKCNIGDLILNVGAGGGAS-VPAGGAAGGAAAAAAPPPKEKKEEPKEESD

Query:  DDMGFSLF
        DDMGFSLF
Subjt:  DDMGFSLF

Q8LCW9 60S acidic ribosomal protein P1-12.6e-1651.38Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAA    ++KK+EP EES
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES

Query:  DDDMGFSLF
        D D+GF LF
Subjt:  DDDMGFSLF

Q8LEQ0 60S acidic ribosomal protein P1-36.8e-1753.64Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEE
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAAAP  +E KK+EP EE
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEE

Query:  SDDDMGFSLF
        SD D+GF LF
Subjt:  SDDDMGFSLF

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family1.8e-1751.38Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAA    ++KK+EP EES
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES

Query:  DDDMGFSLF
        D D+GF LF
Subjt:  DDDMGFSLF

AT1G01100.2 60S acidic ribosomal protein family1.8e-1751.38Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAA    ++KK+EP EES
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES

Query:  DDDMGFSLF
        D D+GF LF
Subjt:  DDDMGFSLF

AT1G01100.4 60S acidic ribosomal protein family1.8e-1751.38Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAA    ++KK+EP EES
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEES

Query:  DDDMGFSLF
        D D+GF LF
Subjt:  DDDMGFSLF

AT5G47700.1 60S acidic ribosomal protein family4.8e-1853.64Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEE
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAAAP  +E KK+EP EE
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEE

Query:  SDDDMGFSLF
        SD D+GF LF
Subjt:  SDDDMGFSLF

AT5G47700.2 60S acidic ribosomal protein family4.8e-1853.64Show/hide
Query:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEE
        +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+NVGAGGG   P   A  AAGG AAAAAP  +E KK+EP EE
Subjt:  SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILNVGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEE

Query:  SDDDMGFSLF
        SD D+GF LF
Subjt:  SDDDMGFSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTGGAGAAGTTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCTTATTACTGCAGAAAAGATTGCTGCGCTTTTGGCCGAGAAGTGTAACAT
TGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCTGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGG
AAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTGGAGAAGTTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCTTATTACTGCAGAAAAGATTGCTGCGCTTTTGGCCGAGAAGTGTAACAT
TGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCTGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGG
AAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG
Protein sequenceShow/hide protein sequence
MSVGEVACSYAALILYDDNILITAEKIAALLAEKCNIGDLILNVGAGGGASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLFG