; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G10670 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10670
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr06:18365547..18370755
RNA-Seq ExpressionClc06G10670
SyntenyClc06G10670
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033067.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]5.7e-2231.01Show/hide
Query:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKV---VRLH------------------------EFPQP----------------
        YK+RLVL +TSSLI  +L  + D VV  HS FL TYKRL  ELYW  +   V+ H                        E PQ                 
Subjt:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKV---VRLH------------------------EFPQP----------------

Query:  -------VVLDR-NKVFISHV-------------------------------GLR-----------------LPGAEFWYDTSFHNSLETTPFHAVYRCA
               VV+DR  K F+SH+                               GL                  LP AEFWY+T+F  +L  +PF   Y   
Subjt:  -------VVLDR-NKVFISHV-------------------------------GLR-----------------LPGAEFWYDTSFHNSLETTPFHAVYRCA

Query:  PSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV-----------------------GLPKHEAMWETMETMQQKFH
        P PLLSYG+  T+N+ LD QL   +  L AL+E L LAQ+QM ++ DR    VE+                         GLP+HE  WE  + ++Q + 
Subjt:  PSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV-----------------------GLPKHEAMWETMETMQQKFH

Query:  ESHLEDKVAVTAGCSV
        + HLEDKV +  G ++
Subjt:  ESHLEDKVAVTAGCSV

KAA0034981.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]2.0e-2227.97Show/hide
Query:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYW----------------------------------------------------PK-
        YKDRLV+ +TS+L+ T+L T  DLV   HS FL TYKRL GELYW                                                    PK 
Subjt:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYW----------------------------------------------------PK-

Query:  --------------------------------------VVRLHEFPQPVVLDRNKVFISH----------------------------------------
                                              +VRLH +P+ +V DR+K+F+SH                                        
Subjt:  --------------------------------------VVRLHEFPQPVVLDRNKVFISH----------------------------------------

Query:  -VGLR-------LPGAEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV---
          G R       L  AE+WY+T+F  SL  TPF AVY   P PL+ +GD  T +  LD QL   +  L ALKE L+ AQE+M +  D+   +VE+++   
Subjt:  -VGLR-------LPGAEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV---

Query:  -------------------GLPKHEAMWETMETMQQKFHESHLEDKVAVTAGCS
                           GLP+ E  WE  + +QQ++ E HLED V +  GC+
Subjt:  -------------------GLPKHEAMWETMETMQQKFHESHLEDKVAVTAGCS

KAA0042076.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.4e-2233.47Show/hide
Query:  LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LRLPG-------------------------------------
        +VV+R S++ H  T K     + + EL+  +VVRLH FPQ +VLDR+K+F+SH      RL G                                     
Subjt:  LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LRLPG-------------------------------------

Query:  --------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFD-----------
                AE+WY+T++  +L  +PF AVY   PSPL+ YGDL T N+ L DQL   +  L ALKE LR+AQE+M  + D     +EF+           
Subjt:  --------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFD-----------

Query:  -------------------VGLPKHEAMWETMETMQQKFHESHLEDKV
                            GLP HEA WE  +  QQ F + HLEDK+
Subjt:  -------------------VGLPKHEAMWETMETMQQKFHESHLEDKV

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]5.7e-2227.78Show/hide
Query:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWP------------------------------------------------------
        YKDRLVL ++SSLI  +L TY D VV  HS FL TYKRL  ELYWP                                                      
Subjt:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWP------------------------------------------------------

Query:  -------------------------------------KVVRLHEFPQPVVLDRNKVFISHVG---LRLPG------------------------------
                                             +VVRLH FP  +V DR+K+F+S+      RL G                              
Subjt:  -------------------------------------KVVRLHEFPQPVVLDRNKVFISHVG---LRLPG------------------------------

Query:  ---------------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANA-MLDQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDVG--
                       AE+WY+T+++ SL T+PF  +Y   P  LLSYGD  T N+ ++DQL   +  L  L+EQL LAQ+QM ++ D+    VEF+VG  
Subjt:  ---------------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANA-MLDQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDVG--

Query:  ----------------------------------LPKHEAMWETMETMQQKFHESHLEDK
                                          LP HEA WE+ + +QQ++   HLEDK
Subjt:  ----------------------------------LPKHEAMWETMETMQQKFHESHLEDK

XP_038895982.1 uncharacterized protein LOC120084159 [Benincasa hispida]6.5e-2628.96Show/hide
Query:  IDAELQSIRERHLLSVRGKVIFFPFLITFLGHLCKSKVLRVMVVHEDEKSEEM-KWEGETIENEMI--------EVGE-----VVELSLNTVVGNPGTMR
        ++  L  +RE  L + R K  F    + +LGH+   + + V    + EK   + +W+   +E   +        ++GE     VV       VG      
Subjt:  IDAELQSIRERHLLSVRGKVIFFPFLITFLGHLCKSKVLRVMVVHEDEKSEEM-KWEGETIENEMI--------EVGE-----VVELSLNTVVGNPGTMR

Query:  KDRKFINKTFDLLAGVLDMCRGRFGACW-----CQDFQKDEQSRLYKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKVVR-LHEF
         DR   N   +     +   +   G C       QDF        +K RLVL  TSSLI T++ TY D +   HS FL TYK + GELYW  + R + E+
Subjt:  KDRKFINKTFDLLAGVLDMCRGRFGACW-----CQDFQKDEQSRLYKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKVVR-LHEF

Query:  PQP------------VVLDRNKVFISHVGLRLP-------------------------------------GAEFWYDTSFHNSLETTPFHAVYRCAPSPL
         +             VV+DR   +   + L+ P                                      AE+WY+T+++ S   +PF  VY   P  L
Subjt:  PQP------------VVLDRNKVFISHVGLRLP-------------------------------------GAEFWYDTSFHNSLETTPFHAVYRCAPSPL

Query:  LSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV------------------GLPKHEAMWETMETMQQKFHESHLEDKVA
        + YGD  T+NA LD Q+ + + AL  LKE LR+AQE+M KF+D+   +VEF +                  GL +HEA WE +   Q +F E +L+DKV 
Subjt:  LSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV------------------GLPKHEAMWETMETMQQKFHESHLEDKVA

Query:  VTAG
        V  G
Subjt:  VTAG

TrEMBL top hitse value%identityAlignment
A0A5A7SUR4 Transposon Tf2-1 polyprotein isoform X12.8e-2231.01Show/hide
Query:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKV---VRLH------------------------EFPQP----------------
        YK+RLVL +TSSLI  +L  + D VV  HS FL TYKRL  ELYW  +   V+ H                        E PQ                 
Subjt:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKV---VRLH------------------------EFPQP----------------

Query:  -------VVLDR-NKVFISHV-------------------------------GLR-----------------LPGAEFWYDTSFHNSLETTPFHAVYRCA
               VV+DR  K F+SH+                               GL                  LP AEFWY+T+F  +L  +PF   Y   
Subjt:  -------VVLDR-NKVFISHV-------------------------------GLR-----------------LPGAEFWYDTSFHNSLETTPFHAVYRCA

Query:  PSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV-----------------------GLPKHEAMWETMETMQQKFH
        P PLLSYG+  T+N+ LD QL   +  L AL+E L LAQ+QM ++ DR    VE+                         GLP+HE  WE  + ++Q + 
Subjt:  PSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV-----------------------GLPKHEAMWETMETMQQKFH

Query:  ESHLEDKVAVTAGCSV
        + HLEDKV +  G ++
Subjt:  ESHLEDKVAVTAGCSV

A0A5A7TJB8 Retrotransposable element Tf23.6e-2233.47Show/hide
Query:  LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LRLPG-------------------------------------
        +VV+R S++ H  T K     + + EL+  +VVRLH FPQ +VLDR+K+F+SH      RL G                                     
Subjt:  LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LRLPG-------------------------------------

Query:  --------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFD-----------
                AE+WY+T++  +L  +PF AVY   PSPL+ YGDL T N+ L DQL   +  L ALKE LR+AQE+M  + D     +EF+           
Subjt:  --------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFD-----------

Query:  -------------------VGLPKHEAMWETMETMQQKFHESHLEDKV
                            GLP HEA WE  +  QQ F + HLEDK+
Subjt:  -------------------VGLPKHEAMWETMETMQQKFHESHLEDKV

A0A5D3BJ44 Retrotransposon protein, putative, unclassified2.8e-2227.78Show/hide
Query:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWP------------------------------------------------------
        YKDRLVL ++SSLI  +L TY D VV  HS FL TYKRL  ELYWP                                                      
Subjt:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWP------------------------------------------------------

Query:  -------------------------------------KVVRLHEFPQPVVLDRNKVFISHVG---LRLPG------------------------------
                                             +VVRLH FP  +V DR+K+F+S+      RL G                              
Subjt:  -------------------------------------KVVRLHEFPQPVVLDRNKVFISHVG---LRLPG------------------------------

Query:  ---------------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANA-MLDQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDVG--
                       AE+WY+T+++ SL T+PF  +Y   P  LLSYGD  T N+ ++DQL   +  L  L+EQL LAQ+QM ++ D+    VEF+VG  
Subjt:  ---------------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANA-MLDQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDVG--

Query:  ----------------------------------LPKHEAMWETMETMQQKFHESHLEDK
                                          LP HEA WE+ + +QQ++   HLEDK
Subjt:  ----------------------------------LPKHEAMWETMETMQQKFHESHLEDK

A0A5D3BRN6 Transposon Tf2-9 polyprotein9.5e-2327.97Show/hide
Query:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYW----------------------------------------------------PK-
        YKDRLV+ +TS+L+ T+L T  DLV   HS FL TYKRL GELYW                                                    PK 
Subjt:  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYW----------------------------------------------------PK-

Query:  --------------------------------------VVRLHEFPQPVVLDRNKVFISH----------------------------------------
                                              +VRLH +P+ +V DR+K+F+SH                                        
Subjt:  --------------------------------------VVRLHEFPQPVVLDRNKVFISH----------------------------------------

Query:  -VGLR-------LPGAEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV---
          G R       L  AE+WY+T+F  SL  TPF AVY   P PL+ +GD  T +  LD QL   +  L ALKE L+ AQE+M +  D+   +VE+++   
Subjt:  -VGLR-------LPGAEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV---

Query:  -------------------GLPKHEAMWETMETMQQKFHESHLEDKVAVTAGCS
                           GLP+ E  WE  + +QQ++ E HLED V +  GC+
Subjt:  -------------------GLPKHEAMWETMETMQQKFHESHLEDKVAVTAGCS

A0A5D3D331 Retrotransposable element Tf23.6e-2233.47Show/hide
Query:  LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LRLPG-------------------------------------
        +VV+R S++ H  T K     + + EL+  +VVRLH FPQ +VLDR+K+F+SH      RL G                                     
Subjt:  LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LRLPG-------------------------------------

Query:  --------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFD-----------
                AE+WY+T++  +L  +PF AVY   PSPL+ YGDL T N+ L DQL   +  L ALKE LR+AQE+M  + D     +EF+           
Subjt:  --------AEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFD-----------

Query:  -------------------VGLPKHEAMWETMETMQQKFHESHLEDKV
                            GLP HEA WE  +  QQ F + HLEDK+
Subjt:  -------------------VGLPKHEAMWETMETMQQKFHESHLEDKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTGCTCGCCTGGAAAGAATTCTGCAAGGTGGATTATCGATTATGAAACTCCCACTAGTCAAGACTTGTGTTAGGAGGGAAAACCTTCCATGCCCTACTAATGC
TAGCGCCATTGAAACCGTCACATTGAAAGGACAGACGCAAACCCCCATGAAGGTCACTTACAATTGCTTCATTGATGCTGAACTACAATCAATAAGAGAAAGGCATTTGC
TTTCGGTGCGAGGAAAAGTCATCTTCTTTCCTTTTTTGATTACCTTCCTTGGCCATCTCTGTAAAAGCAAGGTACTGAGAGTTATGGTGGTTCACGAAGATGAAAAGAGT
GAAGAGATGAAGTGGGAAGGTGAAACCATTGAAAATGAGATGATTGAAGTAGGGGAAGTGGTCGAACTATCGTTAAATACGGTAGTGGGGAACCCTGGAACTATGAGGAA
AGATAGAAAATTTATTAATAAAACATTTGACCTGTTAGCTGGCGTTTTGGACATGTGTCGAGGGCGTTTCGGGGCGTGTTGGTGTCAGGACTTTCAGAAGGATGAGCAAA
GTCGCCTTTACAAAGATCGATTGGTGTTATTAGAAACCTCTTCCTTGATCCACACAGTGTTGCTTACTTACCCCGATTTGGTCGTCGACAGGCACTCAGAATTTCTACAT
ACGTATAAACGACTCATGGGTGAATTGTATTGGCCAAAGGTGGTTAGACTCCACGAGTTTCCTCAACCAGTTGTCTTAGATCGAAATAAAGTTTTCATTAGCCATGTTGG
ATTGAGGTTGCCTGGGGCAGAGTTCTGGTACGATACTTCCTTTCATAATTCCCTTGAAACCACCCCATTCCACGCTGTGTACCGATGTGCTCCATCGCCCCTATTGTCTT
ATGGTGATCTTAAAACTGCCAATGCAATGTTGGACCAACTAACAAATTGTAATGAGGCCCTCGAAGCCTTGAAGGAACAGTTGCGATTAGCTCAGGAACAAATGAATAAG
TTTACAGACCGTCATCATTGTGAGGTGGAATTTGATGTGGGATTACCAAAGCATGAAGCGATGTGGGAAACAATGGAAACCATGCAACAAAAATTTCACGAGTCCCACCT
CGAGGACAAGGTGGCTGTCACCGCTGGGTGTAGTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCTGCTCGCCTGGAAAGAATTCTGCAAGGTGGATTATCGATTATGAAACTCCCACTAGTCAAGACTTGTGTTAGGAGGGAAAACCTTCCATGCCCTACTAATGC
TAGCGCCATTGAAACCGTCACATTGAAAGGACAGACGCAAACCCCCATGAAGGTCACTTACAATTGCTTCATTGATGCTGAACTACAATCAATAAGAGAAAGGCATTTGC
TTTCGGTGCGAGGAAAAGTCATCTTCTTTCCTTTTTTGATTACCTTCCTTGGCCATCTCTGTAAAAGCAAGGTACTGAGAGTTATGGTGGTTCACGAAGATGAAAAGAGT
GAAGAGATGAAGTGGGAAGGTGAAACCATTGAAAATGAGATGATTGAAGTAGGGGAAGTGGTCGAACTATCGTTAAATACGGTAGTGGGGAACCCTGGAACTATGAGGAA
AGATAGAAAATTTATTAATAAAACATTTGACCTGTTAGCTGGCGTTTTGGACATGTGTCGAGGGCGTTTCGGGGCGTGTTGGTGTCAGGACTTTCAGAAGGATGAGCAAA
GTCGCCTTTACAAAGATCGATTGGTGTTATTAGAAACCTCTTCCTTGATCCACACAGTGTTGCTTACTTACCCCGATTTGGTCGTCGACAGGCACTCAGAATTTCTACAT
ACGTATAAACGACTCATGGGTGAATTGTATTGGCCAAAGGTGGTTAGACTCCACGAGTTTCCTCAACCAGTTGTCTTAGATCGAAATAAAGTTTTCATTAGCCATGTTGG
ATTGAGGTTGCCTGGGGCAGAGTTCTGGTACGATACTTCCTTTCATAATTCCCTTGAAACCACCCCATTCCACGCTGTGTACCGATGTGCTCCATCGCCCCTATTGTCTT
ATGGTGATCTTAAAACTGCCAATGCAATGTTGGACCAACTAACAAATTGTAATGAGGCCCTCGAAGCCTTGAAGGAACAGTTGCGATTAGCTCAGGAACAAATGAATAAG
TTTACAGACCGTCATCATTGTGAGGTGGAATTTGATGTGGGATTACCAAAGCATGAAGCGATGTGGGAAACAATGGAAACCATGCAACAAAAATTTCACGAGTCCCACCT
CGAGGACAAGGTGGCTGTCACCGCTGGGTGTAGTGTTTAG
Protein sequenceShow/hide protein sequence
MQAARLERILQGGLSIMKLPLVKTCVRRENLPCPTNASAIETVTLKGQTQTPMKVTYNCFIDAELQSIRERHLLSVRGKVIFFPFLITFLGHLCKSKVLRVMVVHEDEKS
EEMKWEGETIENEMIEVGEVVELSLNTVVGNPGTMRKDRKFINKTFDLLAGVLDMCRGRFGACWCQDFQKDEQSRLYKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLH
TYKRLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVGLRLPGAEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLDQLTNCNEALEALKEQLRLAQEQMNK
FTDRHHCEVEFDVGLPKHEAMWETMETMQQKFHESHLEDKVAVTAGCSV