; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G10760 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10760
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed DNA polymerase
Genome locationClcChr06:18490952..18492576
RNA-Seq ExpressionClc06G10760
SyntenyClc06G10760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]3.7e-1338.36Show/hide
Query:  ENHPNFGWGRNQPQT--QGTRQQPQRSNNPGYNQGVQ---------EHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQC
        ++HPNF WG    Q+   G  QQP R   P   QG Q         ++ ++ +  + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR +GKE C
Subjt:  ENHPNFGWGRNQPQT--QGTRQQPQRSNNPGYNQGVQ---------EHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQC

Query:  QVVTLRGGKVLPT--------ETQDIRAQGNLQPHITSQPIPSTPI
        + VTLR GK++ +        E   I+ +G ++    +  +   P+
Subjt:  QVVTLRGGKVLPT--------ETQDIRAQGNLQPHITSQPIPSTPI

XP_030498047.1 uncharacterized protein LOC115713707 [Cannabis sativa]3.4e-1441.48Show/hide
Query:  ENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQ---GVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEA
        ++HPNF WG     + G + Q ++S  PG++Q     Q HQ Q +Q                  + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE 
Subjt:  ENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQ---GVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEA

Query:  PRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQP
        PR +GKE C+ +TLR GK+L +   ++ A G+ +P
Subjt:  PRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQP

XP_030503898.1 uncharacterized protein LOC115719117 [Cannabis sativa]2.0e-1441.48Show/hide
Query:  ENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQ---GVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEA
        ++HPNF WG     + G + Q ++S  PG++Q     Q HQ Q +Q                  + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE 
Subjt:  ENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQ---GVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEA

Query:  PRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQP
        PR +GKE C+ VTLR GK++ +   ++ A+G+ +P
Subjt:  PRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQP

XP_030507648.1 uncharacterized protein LOC115722545 [Cannabis sativa]2.0e-1444.92Show/hide
Query:  ENHPNFGWGRNQPQTQGTRQ-QPQRSNNPGYNQGVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPR
        ++HPNF WG     + G +Q Q ++S  PG++Q  + HQ Q +Q                  + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR
Subjt:  ENHPNFGWGRNQPQTQGTRQ-QPQRSNNPGYNQGVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPR

Query:  GNGKEQCQVVTLRGGKVL
         +GKE C+ +TLR GK+L
Subjt:  GNGKEQCQVVTLRGGKVL

XP_030509259.1 uncharacterized protein LOC115723937 [Cannabis sativa]1.3e-1341.91Show/hide
Query:  ENHPNFGWGRNQPQTQGTRQ-QPQRSNNPGYNQ---GVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTE
        ++HPNF WG     + G +Q Q ++S  PG++Q     Q HQ Q +Q                  + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE
Subjt:  ENHPNFGWGRNQPQTQGTRQ-QPQRSNNPGYNQ---GVQEHQSQRNQQ-----------------VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTE

Query:  APRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQP
         PR +GKE C+ VTLR GK++ +   ++ A G+ +P
Subjt:  APRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQP

TrEMBL top hitse value%identityAlignment
A0A2N0QJ51 Uncharacterized protein (Fragment)3.5e-0939.1Show/hide
Query:  NHPNFGW----GRNQPQTQGTRQQPQRSNNPGYNQ-----------GVQEHQSQRNQQVD---------NQAAATRNLEVQMGQIASALKIRPQGALPSD
        NHPNF W    G NQPQ QG +Q P++ +  G +Q           G Q H    N++ D         +QA   + LE Q+GQ+A+AL  RPQG LPSD
Subjt:  NHPNFGW----GRNQPQTQGTRQQPQRSNNPGYNQ-----------GVQEHQSQRNQQVD---------NQAAATRNLEVQMGQIASALKIRPQGALPSD

Query:  TEAP-RGNGKEQCQVVTLRGGKVL--PTETQDIRAQGNLQPHITSQPIPSTPINNP
        TE P + + KEQ Q +TLR GK    PT T  ++ QG+    I ++   +T   NP
Subjt:  TEAP-RGNGKEQCQVVTLRGGKVL--PTETQDIRAQGNLQPHITSQPIPSTPINNP

A0A5B6VWJ0 Retroelement pol polyprotein-like3.2e-1035.14Show/hide
Query:  NHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQGVQE----------------HQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNG
        NH +F W      T     QP+ +  P + Q VQ+                + ++ +  + +QAA  +NLE Q+GQ+A+ L+ R QGALPSDTE PR  G
Subjt:  NHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQGVQE----------------HQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNG

Query:  KEQCQVVTLRGGKVLPTETQDI-RAQGNLQPHITSQPIPSTPINNPQP
        KE C+ +TLR  K++   T ++ + Q N Q     QP   TP+ +P+P
Subjt:  KEQCQVVTLRGGKVLPTETQDI-RAQGNLQPHITSQPIPSTPINNPQP

A0A6J1DWK1 uncharacterized protein LOC1110250531.1e-1042.74Show/hide
Query:  NHPNFGW-----GRNQPQTQGTRQQPQRSNNPGY---NQGVQEHQSQ----------------RNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSD
        NHPNFGW     G N   +     Q + S  PG+    Q V+ +QS+                 +  V +QAA+ RNLE+Q+GQ+A  LK RP GALPSD
Subjt:  NHPNFGW-----GRNQPQTQGTRQQPQRSNNPGY---NQGVQEHQSQ----------------RNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSD

Query:  TEAPRGNGKEQCQVVTLRGGKVLP
        TE P+ + KEQC  +TLR GK LP
Subjt:  TEAPRGNGKEQCQVVTLRGGKVLP

A0A6J1DXK5 uncharacterized protein LOC1110255006.0e-0946.25Show/hide
Query:  EHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVLPT---ETQDIRAQGN
        ++    +  V +QA + RNLE+Q+GQ+A+ LK +P+G LPSD + P+ +GKEQC  +TLR GK LPT     Q IR + N
Subjt:  EHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVLPT---ETQDIRAQGN

A0A6J1DYG0 uncharacterized protein LOC1110257646.0e-0929.86Show/hide
Query:  VCNVARATCTICVPT------IHNLSAMFRTTH----TLRPIIQV----GENHPNFGW-------GRNQPQTQGTRQ-----------------------
        VC V    C+ C          HN +++F   H       P          +HPNF W       G NQ Q+Q  +Q                       
Subjt:  VCNVARATCTICVPT------IHNLSAMFRTTH----TLRPIIQV----GENHPNFGW-------GRNQPQTQGTRQ-----------------------

Query:  QPQRSNNPGYNQGVQEHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGG-----KVLPTETQDIRAQGNLQP
         P ++NN      ++E+ ++ +  + +QAA+ RN E Q+GQ+A+ LK RPQG+ P  TE P+  GKEQC+ VTLR G       +PT    I + G   P
Subjt:  QPQRSNNPGYNQGVQEHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGG-----KVLPTETQDIRAQGNLQP

Query:  HITSQPIPSTP
         +     P+TP
Subjt:  HITSQPIPSTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGTCTATGCGTCCATGAATAGTTTGGCCGATGTCAACGCGTTATCATGCGTACATGAAGAACAGTTTGCTAATGCGTCGTCCTGCGTTAAGAAGCCATCAACGCA
TCGTCTGGTTTCCTGTGTCAAAACATGCGTTTTAGGCTCAAAAGGTGCTGTGTGCAATGTGGCGAGGGCCACCTGTACGATATGTGTCCCTACAATCCACAATCTGTCTG
CTATGTTCAGAACAACCCATACTCTAAGACCTATAATCCAGGTTGGAGAAAACCACCCTAACTTTGGATGGGGACGAAATCAACCACAGACGCAGGGAACTAGGCAACAA
CCGCAGAGAAGCAACAACCCTGGTTACAACCAAGGTGTTCAAGAGCATCAATCACAAAGAAACCAGCAAGTGGACAATCAAGCCGCTGCGACTCGAAATCTAGAAGTCCA
AATGGGACAAATTGCAAGTGCGCTCAAAATCAGACCTCAAGGAGCATTGCCCAGTGATACCGAAGCCCCACGAGGTAACGGTAAAGAACAATGTCAAGTTGTGACATTGA
GGGGTGGGAAGGTTCTTCCCACTGAAACGCAAGACATTAGGGCACAAGGAAATCTACAGCCTCACATCACTTCACAACCAATCCCAAGCACACCAATTAATAATCCGCAA
CCTGATGCGCACTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCGTCTATGCGTCCATGAATAGTTTGGCCGATGTCAACGCGTTATCATGCGTACATGAAGAACAGTTTGCTAATGCGTCGTCCTGCGTTAAGAAGCCATCAACGCA
TCGTCTGGTTTCCTGTGTCAAAACATGCGTTTTAGGCTCAAAAGGTGCTGTGTGCAATGTGGCGAGGGCCACCTGTACGATATGTGTCCCTACAATCCACAATCTGTCTG
CTATGTTCAGAACAACCCATACTCTAAGACCTATAATCCAGGTTGGAGAAAACCACCCTAACTTTGGATGGGGACGAAATCAACCACAGACGCAGGGAACTAGGCAACAA
CCGCAGAGAAGCAACAACCCTGGTTACAACCAAGGTGTTCAAGAGCATCAATCACAAAGAAACCAGCAAGTGGACAATCAAGCCGCTGCGACTCGAAATCTAGAAGTCCA
AATGGGACAAATTGCAAGTGCGCTCAAAATCAGACCTCAAGGAGCATTGCCCAGTGATACCGAAGCCCCACGAGGTAACGGTAAAGAACAATGTCAAGTTGTGACATTGA
GGGGTGGGAAGGTTCTTCCCACTGAAACGCAAGACATTAGGGCACAAGGAAATCTACAGCCTCACATCACTTCACAACCAATCCCAAGCACACCAATTAATAATCCGCAA
CCTGATGCGCACTTTTAG
Protein sequenceShow/hide protein sequence
MVVYASMNSLADVNALSCVHEEQFANASSCVKKPSTHRLVSCVKTCVLGSKGAVCNVARATCTICVPTIHNLSAMFRTTHTLRPIIQVGENHPNFGWGRNQPQTQGTRQQ
PQRSNNPGYNQGVQEHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQPHITSQPIPSTPINNPQ
PDAHF