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Clc06G10780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationClcChr06:18498465..18498824
RNA-Seq ExpressionClc06G10780
SyntenyClc06G10780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6734747.1 hypothetical protein I3842_01G285500 [Carya illinoinensis]1.9e-1649.49Show/hide
Query:  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER
        MAEE    +P+ ++DY +  +  N   IM  PIN NN ELKP LI M ++  F      DP  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ R
Subjt:  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER

KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]1.9e-1649.49Show/hide
Query:  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER
        MAEE    +P+ ++DY +  +  N   IM  PIN NN ELKP LI M ++  F      DP  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ R
Subjt:  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER

KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]2.5e-1649.49Show/hide
Query:  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER
        MAEE    +P+ ++DY +  +  N   IM  PIN NN ELKP LI M ++  F      DP  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ R
Subjt:  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.5e-3783.33Show/hide
Query:  MAEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERD
        MAEEIPKAI+DYFQ TLP +QP IMNVPIN+NN ELKPGLIQMARELAFR +TN+DP KHLR FLEI GTVKMNGVSNDAIKLRLFPFSLQD+ +D
Subjt:  MAEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERD

XP_022157708.1 uncharacterized protein LOC111024361 [Momordica charantia]2.2e-2057.45Show/hide
Query:  IQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVN
        I+DY Q   P N   I+N+PIN NN ELKPGLIQM RE  FR    +DP  HL  FL++ GTVKMNGV +DAI+LRLFP SLQD+E  +  + N
Subjt:  IQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVN

TrEMBL top hitse value%identityAlignment
A0A2I4E1Q5 uncharacterized protein LOC1089854721.1e-1448.35Show/hide
Query:  PKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERD
        P+ ++DY +  +  N   I    IN NN ELKP LI M ++  F      DP  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ RD
Subjt:  PKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERD

A0A6J1DU19 uncharacterized protein LOC1110243611.1e-2057.45Show/hide
Query:  IQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVN
        I+DY Q   P N   I+N+PIN NN ELKPGLIQM RE  FR    +DP  HL  FL++ GTVKMNGV +DAI+LRLFP SLQD+E  +  + N
Subjt:  IQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVN

A0A6P6XAQ1 Reverse transcriptase1.6e-1344.94Show/hide
Query:  KAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER
        + ++D+       +Q  I+   +N NN E+KP LIQM ++  +     +DP  HL  FLEI  T+K NGVS DAIKLRLFPFSL+D+ +
Subjt:  KAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER

A0A803P9R1 Uncharacterized protein9.6e-1445Show/hide
Query:  AEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVV
        A+  P+AI+DY    +  N  DI N  I  NN ELK  LI + +   F     +DP  HL  FLE+  TVKMN V++DAI+L LFPFSL+D+ R  G ++
Subjt:  AEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVV

A0A803PJA6 Uncharacterized protein1.1e-1447.87Show/hide
Query:  AEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER
        A+  P+A++DY    +  N   I N  I  NN ELKP LI M ++  F     KDP  HL  FLE+  T+KMNG+ +DAIKLRLFPFSL+D+ +
Subjt:  AEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGGAGATACCAAAGGCAATTCAAGACTACTTCCAATCGACATTACCGACAAATCAACCCGACATCATGAATGTACCCATCAATATCAACAACATTGAGTTGAA
ACCAGGGTTGATCCAAATGGCTAGAGAGCTAGCTTTTAGAGACAAAACTAATAAAGATCCTCAAAAGCACTTACGGTTCTTCTTAGAAATATTTGGAACGGTAAAGATGA
ATGGTGTCTCTAACGATGCAATTAAACTAAGACTTTTTCCTTTCTCTTTACAGGATCAAGAAAGGGACAAAGGATTGGTTGTAAACCATACCTCCGGTGTCACACCCCCT
CCCAGTTTACCCTCACTACTCGGGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGGAGATACCAAAGGCAATTCAAGACTACTTCCAATCGACATTACCGACAAATCAACCCGACATCATGAATGTACCCATCAATATCAACAACATTGAGTTGAA
ACCAGGGTTGATCCAAATGGCTAGAGAGCTAGCTTTTAGAGACAAAACTAATAAAGATCCTCAAAAGCACTTACGGTTCTTCTTAGAAATATTTGGAACGGTAAAGATGA
ATGGTGTCTCTAACGATGCAATTAAACTAAGACTTTTTCCTTTCTCTTTACAGGATCAAGAAAGGGACAAAGGATTGGTTGTAAACCATACCTCCGGTGTCACACCCCCT
CCCAGTTTACCCTCACTACTCGGGGAGTGA
Protein sequenceShow/hide protein sequence
MAEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVNHTSGVTPP
PSLPSLLGE