; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G10930 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G10930
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr06:18930093..18930553
RNA-Seq ExpressionClc06G10930
SyntenyClc06G10930
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052840.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-1663.1Show/hide
Query:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE
        KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKEMV PTD   LV  SEPTQ QG  E
Subjt:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE

KAA0060782.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1554.64Show/hide
Query:  MDITFLEDKPFFPVSPRQGESSSEETN----CSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQES
        MD+TFLED+PFFPVS  QGES SEE+N     S  ST   L+  P   +  TVLPT QVPW TYYR+NLRKE+  P + P  V  SEP + QG  +S
Subjt:  MDITFLEDKPFFPVSPRQGESSSEETN----CSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQES

TYK08937.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1661.45Show/hide
Query:  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASE
        MD+TFLED+ FF  S  QG+S+SEETN S+ S P DL   P+LS  DTVLPT QVPWITYY+KNL+ EMV PT  P +V   E
Subjt:  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASE

TYK18833.1 Beta-galactosidase [Cucumis melo var. makuwa]8.6e-1663.1Show/hide
Query:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE
        KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKEMV PTD   LV  SEPTQ QG  E
Subjt:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE

XP_038884509.1 uncharacterized protein LOC120075312 [Benincasa hispida]1.5e-1550Show/hide
Query:  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPAS--EPTQTQGAQESEIMSQ
        MD TF EDK FFPVSP QG+++SEE N S+ S P+DL P P+L T D+VL T+QV WITYYRKNLRKE+V P  +P++ P    + ++ + AQ + I+  
Subjt:  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPAS--EPTQTQGAQESEIMSQ

Query:  KPTTEEESTN
            E +  N
Subjt:  KPTTEEESTN

TrEMBL top hitse value%identityAlignment
A0A5A7UCE7 Reverse transcriptase4.2e-1663.1Show/hide
Query:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE
        KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKEMV PTD   LV  SEPTQ QG  E
Subjt:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE

A0A5A7UY25 Reverse transcriptase7.1e-1654.64Show/hide
Query:  MDITFLEDKPFFPVSPRQGESSSEETN----CSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQES
        MD+TFLED+PFFPVS  QGES SEE+N     S  ST   L+  P   +  TVLPT QVPW TYYR+NLRKE+  P + P  V  SEP + QG  +S
Subjt:  MDITFLEDKPFFPVSPRQGESSSEETN----CSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQES

A0A5D3BBC2 Beta-galactosidase5.6e-1347.96Show/hide
Query:  MDITFLEDKPFFPVSPRQGESSSEETNCS------SPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTL-VPASEPTQTQGAQ
        MD+TF ED+P+FPVS  QGES+ EE+N +      +PST  D+ P P+      +LPT QVPW TY+R+NLRKE+ +PT+ P   V   EP + QG +
Subjt:  MDITFLEDKPFFPVSPRQGESSSEETNCS------SPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTL-VPASEPTQTQGAQ

A0A5D3CAA9 Reverse transcriptase8.4e-1761.45Show/hide
Query:  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASE
        MD+TFLED+ FF  S  QG+S+SEETN S+ S P DL   P+LS  DTVLPT QVPWITYY+KNL+ EMV PT  P +V   E
Subjt:  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASE

A0A5D3D5K0 Beta-galactosidase4.2e-1663.1Show/hide
Query:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE
        KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKEMV PTD   LV  SEPTQ QG  E
Subjt:  KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATCACCTTCCTTGAGGATAAACCCTTCTTTCCCGTTAGTCCTCGTCAGGGAGAGAGTAGTAGTGAAGAGACTAACTGTTCATCACCTTCAACCCCCATTGATCT
CCTTCCTACACCCGTCCTAAGTACCCAAGACACTGTTCTACCCACCAGACAAGTCCCTTGGATAACTTATTACAGGAAGAATCTCAGAAAGGAAATGGTGTTCCCTACTG
ATTCGCCGACTCTGGTCCCAGCATCTGAACCAACACAGACTCAAGGAGCACAGGAGAGTGAGATCATGTCTCAGAAACCTACTACTGAGGAGGAGTCCACAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACATCACCTTCCTTGAGGATAAACCCTTCTTTCCCGTTAGTCCTCGTCAGGGAGAGAGTAGTAGTGAAGAGACTAACTGTTCATCACCTTCAACCCCCATTGATCT
CCTTCCTACACCCGTCCTAAGTACCCAAGACACTGTTCTACCCACCAGACAAGTCCCTTGGATAACTTATTACAGGAAGAATCTCAGAAAGGAAATGGTGTTCCCTACTG
ATTCGCCGACTCTGGTCCCAGCATCTGAACCAACACAGACTCAAGGAGCACAGGAGAGTGAGATCATGTCTCAGAAACCTACTACTGAGGAGGAGTCCACAAACTAG
Protein sequenceShow/hide protein sequence
MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQESEIMSQKPTTEEESTN