CuGenDBv2

Gene ID	Clc06G10970
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	ClcChr06:19174593..19175057
RNA-Seq Expression	Clc06G10970
Synteny	Clc06G10970
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]

1.7e-28

41.56

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV     + IWE L+  Y + + A +  L+T LQ I+K+GL+ 
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
          Y+ + + + +  ++IGEP++Y DHL Y L GL   YN FV SIQ++  RPS+
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]

2.2e-28

41.56

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV     + IWE L+  Y + + A +  L+T LQ I+K+GL+ 
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
          Y+ + + + +  ++IGEP++Y DHL Y L GL   YN FV SIQ++  RPS+
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]

3.5e-26

40.67

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  + G    PP F D  +   N  +  W+R+NR IM WI +SL++  M +IV       IWE L   Y S+++AKI  L+ +LQ++RKDGL+ 
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLD
         +Y+ + K + +  +A+GEP+S +DHL Y+  GL  +YNAFV SI  R D
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLD

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

2.8e-28

44.81

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  +    +SPP++LD    Q N  F  W+R N+ +M WI SSL+   + +IV       IW  L   Y+S +IA +M+L +QLQ I+K  + +
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
        S+YLS++K V D+F+ IGEP+SYRD L  IL+GL  +Y+ FV SI NR DRPSL
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]

1.8e-51

64.29

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+G L G +  PP+FLD  Q+QPN  +  WERYNR +MCWI SSLSEEKM E+VSLE T  IW  L   YDS T A+IM LKT+LQ++RKDG SV
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
        SQYL++IKE+ DKF+A+GEP+SYRDHLA++LDGL S+YNAFV SI NR D PSL
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

TrEMBL top hits

e value

%identity

Alignment

A0A2P5BGF8 Uncharacterized protein

1.7e-26

40.67

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  + G    PP F D  +   N  +  W+R+NR IM WI +SL++  M +IV       IWE L   Y S+++AKI  L+ +LQ++RKDGL+ 
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLD
         +Y+ + K + +  +A+GEP+S +DHL Y+  GL  +YNAFV SI  R D
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLD

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE1

1.4e-28

44.81

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  +    +SPP++LD    Q N  F  W+R N+ +M WI SSL+   + +IV       IW  L   Y+S +IA +M+L +QLQ I+K  + +
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
        S+YLS++K V D+F+ IGEP+SYRD L  IL+GL  +Y+ FV SI NR DRPSL
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

A0A6J1DQX7 uncharacterized protein LOC111022315

8.8e-52

64.29

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+G L G +  PP+FLD  Q+QPN  +  WERYNR +MCWI SSLSEEKM E+VSLE T  IW  L   YDS T A+IM LKT+LQ++RKDG SV
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
        SQYL++IKE+ DKF+A+GEP+SYRDHLA++LDGL S+YNAFV SI NR D PSL
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

A0A7J0EGI5 Uncharacterized protein

8.0e-29

41.56

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV     + IWE L+  Y + + A +  L+T LQ I+K+GL+ 
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
          Y+ + + + +  ++IGEP++Y DHL Y L GL   YN FV SIQ++  RPS+
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

A0A7J0GPN0 UBX domain-containing protein

1.0e-28

41.56

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Query:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV
        +++NGL+  L G    PP FLD QQ Q N  F  W+RYNR +M WI +S++E  + +IV     + IWE L+  Y + + A +  L+T LQ I+K+GL+ 
Subjt:  MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSV

Query:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL
          Y+ + + + +  ++IGEP++Y DHL Y L GL   YN FV SIQ++  RPS+
Subjt:  SQYLSQIKEVTDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

3.6e-05

20.83

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Query:  WERYNRFIMCWISSSLSEEK-MAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDG
        W++ +  +   +  +L+ ++     V+   +  IW  +K  + +N  A+ + L ++L+      + V+ Y  ++K++ D    +  P++ R+ + Y+L+G
Subjt:  WERYNRFIMCWISSSLSEEK-MAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDG

Query:  LRSKYNAFVISIQNRLDRPS
        L  K++  +  I++R   PS
Subjt:  LRSKYNAFVISIQNRLDRPS

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

4.5e-08

24.17

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Query:  WERYNRFIMCWISSSLSEEKMAEIVSLEMTTA-IWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDG
        W+  +  +  WI  ++++  +  I+ +  T   +W  L+  +  N  A+ +  + +L+    D LSV +Y  ++K ++D  + +  PIS R  + ++L+G
Subjt:  WERYNRFIMCWISSSLSEEKMAEIVSLEMTTA-IWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEVTDKFSAIGEPISYRDHLAYILDG

Query:  LRSKYNAFVISIQNRLDRPS
        L  KY+  +  I+++   PS
Subjt:  LRSKYNAFVISIQNRLDRPS

Sequences

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CDS sequence

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ATGCTCTCAAATGGACTCCAAGGTATTTTGTATGGTATGGTAACATCCCCTCCAGAATTTCTTGATCAGCAACAAATTCAACCGAATCTTGGTTTTCAGGTATGGGAGAG
GTATAATAGATTTATTATGTGCTGGATTTCCTCTTCTCTGTCTGAAGAAAAGATGGCTGAAATTGTGAGTTTAGAAATGACTACGGCTATTTGGGAACCTTTGAAATGTA
CCTACGATTCTAATACTATTGCGAAGATTATGGCTTTAAAAACTCAGTTGCAGCATATTAGAAAGGATGGATTATCTGTAAGTCAATATTTGTCTCAAATTAAAGAAGTG
ACTGATAAATTTTCCGCTATAGGAGAGCCTATATCATATCGTGACCATCTTGCTTATATTTTAGATGGATTACGAAGTAAATACAATGCCTTTGTCATATCTATACAAAA
TAGATTAGATAGACCTTCTCTTTAA

mRNA sequence

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Protein sequence

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MLSNGLQGILYGMVTSPPEFLDQQQIQPNLGFQVWERYNRFIMCWISSSLSEEKMAEIVSLEMTTAIWEPLKCTYDSNTIAKIMALKTQLQHIRKDGLSVSQYLSQIKEV
TDKFSAIGEPISYRDHLAYILDGLRSKYNAFVISIQNRLDRPSL

Clc06G10970 (gene) of Watermelon (cordophanus) v2 genome