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Clc06G11150 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G11150
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr06:20739451..20740261
RNA-Seq ExpressionClc06G11150
SyntenyClc06G11150
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025264.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-3266.67Show/hide
Query:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP
        L +  T PP       KPK +SKTGS SVV   T S++TP  SLQ++DL +LLKQVISSNSTALAVTPGTSWL DSACCNHMTSN++LL S+ PI+SLPP
Subjt:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP

Query:  IHSADGNRMPVSHIGIVDTP
        IHS DGN M +SHIG V+TP
Subjt:  IHSADGNRMPVSHIGIVDTP

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-3063.41Show/hide
Query:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS
        G      P     PP H  KPK + K GS+SVVA  T S++T   SLQ++DL +LLKQVISS STALAVTPGTSWL DSACCNHMTS+++LLSS+ P+ S
Subjt:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS

Query:  LPPIHSADGNRMPVSHIGIVDTP
        LPPIHSADGN M +SHIG V+TP
Subjt:  LPPIHSADGNRMPVSHIGIVDTP

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.7e-3264.23Show/hide
Query:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS
        G      P     PPSH  K K + K GS+SVVA  TSS++T   SLQ++DL +LLKQV+SS STALAVTPGTSWL DSACCNHMTS+L+LLSS++P+ S
Subjt:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS

Query:  LPPIHSADGNRMPVSHIGIVDTP
        LPPIHSADGN M +SHIG V+TP
Subjt:  LPPIHSADGNRMPVSHIGIVDTP

KAA0058316.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.2e-3164.23Show/hide
Query:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS
        G      P     PP H  KPK   K GS+SVVA  T S++T   SLQ++DL +LLKQVISS STALAVTPGTSWL DSACCNHMTS+++LLSS+TP+ S
Subjt:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS

Query:  LPPIHSADGNRMPVSHIGIVDTP
        LPPIHSADGN M +SHIG V+TP
Subjt:  LPPIHSADGNRMPVSHIGIVDTP

TYK07403.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-3266.67Show/hide
Query:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP
        L +  T PP       KPK +SKTGS SVV   T S++TP  SLQ++DL +LLKQVISSNSTALAVTPGTSWL DSACCNHMTSN++LL S+ PI+SLPP
Subjt:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP

Query:  IHSADGNRMPVSHIGIVDTP
        IHS DGN M +SHIG V+TP
Subjt:  IHSADGNRMPVSHIGIVDTP

TrEMBL top hitse value%identityAlignment
A0A5A7SI05 Putative mitochondrial protein7.8e-3366.67Show/hide
Query:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP
        L +  T PP       KPK +SKTGS SVV   T S++TP  SLQ++DL +LLKQVISSNSTALAVTPGTSWL DSACCNHMTSN++LL S+ PI+SLPP
Subjt:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP

Query:  IHSADGNRMPVSHIGIVDTP
        IHS DGN M +SHIG V+TP
Subjt:  IHSADGNRMPVSHIGIVDTP

A0A5A7TXR0 Putative mitochondrial protein2.3e-3264.23Show/hide
Query:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS
        G      P     PPSH  K K + K GS+SVVA  TSS++T   SLQ++DL +LLKQV+SS STALAVTPGTSWL DSACCNHMTS+L+LLSS++P+ S
Subjt:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS

Query:  LPPIHSADGNRMPVSHIGIVDTP
        LPPIHSADGN M +SHIG V+TP
Subjt:  LPPIHSADGNRMPVSHIGIVDTP

A0A5A7UVX4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-3164.23Show/hide
Query:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS
        G      P     PP H  KPK   K GS+SVVA  T S++T   SLQ++DL +LLKQVISS STALAVTPGTSWL DSACCNHMTS+++LLSS+TP+ S
Subjt:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS

Query:  LPPIHSADGNRMPVSHIGIVDTP
        LPPIHSADGN M +SHIG V+TP
Subjt:  LPPIHSADGNRMPVSHIGIVDTP

A0A5D3C669 Putative mitochondrial protein7.8e-3366.67Show/hide
Query:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP
        L +  T PP       KPK +SKTGS SVV   T S++TP  SLQ++DL +LLKQVISSNSTALAVTPGTSWL DSACCNHMTSN++LL S+ PI+SLPP
Subjt:  LPHSTTSPP----SHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPP

Query:  IHSADGNRMPVSHIGIVDTP
        IHS DGN M +SHIG V+TP
Subjt:  IHSADGNRMPVSHIGIVDTP

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-3163.41Show/hide
Query:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS
        G      P     PP H  KPK + K GS+SVVA  T S++T   SLQ++DL +LLKQVISS STALAVTPGTSWL DSACCNHMTS+++LLSS+ P+ S
Subjt:  GSYFGQLPHSTTSPPSHV-KPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSNSTALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINS

Query:  LPPIHSADGNRMPVSHIGIVDTP
        LPPIHSADGN M +SHIG V+TP
Subjt:  LPPIHSADGNRMPVSHIGIVDTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCCCAAAAGAGATCTGCTGTCGTCGACCTCATCTGTTCGAAGATCTGTCCGAAGAAACTCAGATCTGCTCTTGTTGACCAAGAACCAACACCACCATGTCCGTTC
GTCACGTTCTTTGTTACAGGTATTGCCACAAGCGGGGTCATATTTTGGACAACTGCCACACTCGACCACCTCGCCCCCTAGTCATGTCAAACCAAAAGGGACTTCTAAAA
CTGGATCTACATCTGTCGTGGCTAATACTACCTCCTCTAATGTTACTCCTGCCCCAAGTCTTCAGATTAGTGACCTCCAAGAGTTACTCAAACAGGTGATCTCTTCCAAT
TCTACTGCTCTTGCTGTCACACCAGGTACCTCTTGGCTATTTGACTCTGCCTGCTGTAATCATATGACTTCCAACTTAACATTATTATCCTCTTACACTCCTATCAATTC
GCTTCCCCCGATTCATTCTGCTGATGGTAATCGCATGCCTGTTTCTCACATTGGCATAGTAGATACACCCCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATCCCCAAAAGAGATCTGCTGTCGTCGACCTCATCTGTTCGAAGATCTGTCCGAAGAAACTCAGATCTGCTCTTGTTGACCAAGAACCAACACCACCATGTCCGTTC
GTCACGTTCTTTGTTACAGGTATTGCCACAAGCGGGGTCATATTTTGGACAACTGCCACACTCGACCACCTCGCCCCCTAGTCATGTCAAACCAAAAGGGACTTCTAAAA
CTGGATCTACATCTGTCGTGGCTAATACTACCTCCTCTAATGTTACTCCTGCCCCAAGTCTTCAGATTAGTGACCTCCAAGAGTTACTCAAACAGGTGATCTCTTCCAAT
TCTACTGCTCTTGCTGTCACACCAGGTACCTCTTGGCTATTTGACTCTGCCTGCTGTAATCATATGACTTCCAACTTAACATTATTATCCTCTTACACTCCTATCAATTC
GCTTCCCCCGATTCATTCTGCTGATGGTAATCGCATGCCTGTTTCTCACATTGGCATAGTAGATACACCCCCATAA
Protein sequenceShow/hide protein sequence
MIPKRDLLSSTSSVRRSVRRNSDLLLLTKNQHHHVRSSRSLLQVLPQAGSYFGQLPHSTTSPPSHVKPKGTSKTGSTSVVANTTSSNVTPAPSLQISDLQELLKQVISSN
STALAVTPGTSWLFDSACCNHMTSNLTLLSSYTPINSLPPIHSADGNRMPVSHIGIVDTPP