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Clc06G11240 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G11240
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr06:21054718..21056131
RNA-Seq ExpressionClc06G11240
SyntenyClc06G11240
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043659.1 uncharacterized protein E6C27_scaffold320G001080 [Cucumis melo var. makuwa]8.7e-2559.48Show/hide
Query:  QARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSV-----------ATWKNVLKLFNDLTDDFRATVEAIRAEMAEMKT
        Q RL+GL+EKVR +DALNA+VD LPI++LTLRV+SLEHKTT+  SFE G SS+SSV            + K +LKLF DL+D F+AT++ I+ E+AEMK 
Subjt:  QARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSV-----------ATWKNVLKLFNDLTDDFRATVEAIRAEMAEMKT

Query:  QVNLTTRAVGNQTPNQ
        QVNL  RAVGN T NQ
Subjt:  QVNLTTRAVGNQTPNQ

KAA0045293.1 uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa]1.3e-1744.53Show/hide
Query:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA
        LYL +EVPD +RF+++RLE + EK   IDA+  RV+ L I +L  RV++LE    R  S ERGDSST SVA           + K +L++ N +++DFRA
Subjt:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA

Query:  TVEAIRAEMAEMKTQVNLTTRAVGNQTP
        T++ +R E+A++  +++LT RA+ NQTP
Subjt:  TVEAIRAEMAEMKTQVNLTTRAVGNQTP

TYK02288.1 uncharacterized protein E5676_scaffold18G00960 [Cucumis melo var. makuwa]1.6e-2650.33Show/hide
Query:  DDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRATVEAIRAE
        D+VRF Q  LEGL+EKV  ++ALNARVD LPI++L LRV+ L+HKTT+  SFE G SS SSVA           + K +LKLF+DL++DF A +E I+ +
Subjt:  DDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRATVEAIRAE

Query:  MAEMKTQVNLTTRAVGNQTPNQM------LDMPNDKHLKSAFYSLKLREFILD
        MA+MK QVNLT R VGNQTPNQ+      + +P  K       + +L+ FI D
Subjt:  MAEMKTQVNLTTRAVGNQTPNQM------LDMPNDKHLKSAFYSLKLREFILD

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.9e-2444.1Show/hide
Query:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA
        LYL  EVPD +R ++AR++   EK   IDA+NAR+D LPI  + +RV +LE K TRP SFERGDSST+              +   +++LFN++T+DF+ 
Subjt:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA

Query:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ------MLDMPNDKHLKSAFYSLKLREFILD
        T++ +RAEM E+ T+VNLT RAVGNQ PNQ       L +P  K       +  L  F+ D
Subjt:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ------MLDMPNDKHLKSAFYSLKLREFILD

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]3.3e-2450Show/hide
Query:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA
        LYL  EVPD +R ++AR++   EK   IDA+NARVD LPI  + +RV + E K TRP SFERGDSST+              +   +++LFN++T+DF+ 
Subjt:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA

Query:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ
        T++ +RAEM E+ T+VNLT RAVGNQ PNQ
Subjt:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ

TrEMBL top hitse value%identityAlignment
A0A5A7TP22 Uncharacterized protein6.5e-1844.53Show/hide
Query:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA
        LYL +EVPD +RF+++RLE + EK   IDA+  RV+ L I +L  RV++LE    R  S ERGDSST SVA           + K +L++ N +++DFRA
Subjt:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA

Query:  TVEAIRAEMAEMKTQVNLTTRAVGNQTP
        T++ +R E+A++  +++LT RA+ NQTP
Subjt:  TVEAIRAEMAEMKTQVNLTTRAVGNQTP

A0A5A7TR52 Uncharacterized protein4.2e-2559.48Show/hide
Query:  QARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSV-----------ATWKNVLKLFNDLTDDFRATVEAIRAEMAEMKT
        Q RL+GL+EKVR +DALNA+VD LPI++LTLRV+SLEHKTT+  SFE G SS+SSV            + K +LKLF DL+D F+AT++ I+ E+AEMK 
Subjt:  QARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSV-----------ATWKNVLKLFNDLTDDFRATVEAIRAEMAEMKT

Query:  QVNLTTRAVGNQTPNQ
        QVNL  RAVGN T NQ
Subjt:  QVNLTTRAVGNQTPNQ

A0A5D3BTI7 Uncharacterized protein7.7e-2750.33Show/hide
Query:  DDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRATVEAIRAE
        D+VRF Q  LEGL+EKV  ++ALNARVD LPI++L LRV+ L+HKTT+  SFE G SS SSVA           + K +LKLF+DL++DF A +E I+ +
Subjt:  DDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRATVEAIRAE

Query:  MAEMKTQVNLTTRAVGNQTPNQM------LDMPNDKHLKSAFYSLKLREFILD
        MA+MK QVNLT R VGNQTPNQ+      + +P  K       + +L+ FI D
Subjt:  MAEMKTQVNLTTRAVGNQTPNQM------LDMPNDKHLKSAFYSLKLREFILD

A0A6J1D906 Reverse transcriptase9.4e-2544.1Show/hide
Query:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA
        LYL  EVPD +R ++AR++   EK   IDA+NAR+D LPI  + +RV +LE K TRP SFERGDSST+              +   +++LFN++T+DF+ 
Subjt:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA

Query:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ------MLDMPNDKHLKSAFYSLKLREFILD
        T++ +RAEM E+ T+VNLT RAVGNQ PNQ       L +P  K       +  L  F+ D
Subjt:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ------MLDMPNDKHLKSAFYSLKLREFILD

A0A6J1DK29 uncharacterized protein LOC1110218291.6e-2450Show/hide
Query:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA
        LYL  EVPD +R ++AR++   EK   IDA+NARVD LPI  + +RV + E K TRP SFERGDSST+              +   +++LFN++T+DF+ 
Subjt:  LYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDSFERGDSSTSSVA-----------TWKNVLKLFNDLTDDFRA

Query:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ
        T++ +RAEM E+ T+VNLT RAVGNQ PNQ
Subjt:  TVEAIRAEMAEMKTQVNLTTRAVGNQTPNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTGGTTGATGCTAGCAAGGGGTTGCGTTGGAGAAGCATGCGATCAAGAGAGCGTTGTGTTGGACAGACGTATGGTGCTATGTGTCTTGAGCATGCTTGTCCAGGG
AGTGTTTGCCTATGGCCACATGCCCAAACCACCCTCAACCACCTTATATTTATGCCTTGAAGTTCCTGACGATGTGAGATTCATCCAAGCTCGGCTAGAAGGTTTGGATG
AGAAGGTCAGAGGAATTGATGCGCTAAATGCTCGAGTAGATGCGCTACCAATCACAAAGTTGACGCTAAGGGTTAACTCCTTGGAACACAAAACTACACGTCCTGATAGT
TTTGAACGTGGGGATAGCTCCACAAGCTCTGTCGCCACATGGAAGAACGTGTTAAAGCTGTTTAATGACTTGACCGACGATTTCAGAGCAACAGTGGAAGCCATCAGGGC
TGAGATGGCTGAAATGAAGACTCAGGTTAACCTAACGACGCGAGCTGTGGGGAACCAAACCCCAAATCAAATGCTCGATATGCCCAATGATAAGCACTTGAAAAGTGCTT
TCTATTCTCTCAAGTTAAGGGAGTTTATATTAGATTTCACTTGTTTGTTAGTGATTTTCAGGGCGAATTTTGGGGATAGCGCCGCGGCGCCGAGACGGCGCTATCGCGGC
GCTGAAACATCAACGCATAGTTCTGGACGCAGAGTAGCATCGCGGCGCCGGGATGACGCTTCCTCGACGCATCCTTGTTTAACGCATGACAGCGTTGCGGCGCTTGGACG
GCGCTGCCGTGGCGCTAAAACCCGAGAGCAATATTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTGGTTGATGCTAGCAAGGGGTTGCGTTGGAGAAGCATGCGATCAAGAGAGCGTTGTGTTGGACAGACGTATGGTGCTATGTGTCTTGAGCATGCTTGTCCAGGG
AGTGTTTGCCTATGGCCACATGCCCAAACCACCCTCAACCACCTTATATTTATGCCTTGAAGTTCCTGACGATGTGAGATTCATCCAAGCTCGGCTAGAAGGTTTGGATG
AGAAGGTCAGAGGAATTGATGCGCTAAATGCTCGAGTAGATGCGCTACCAATCACAAAGTTGACGCTAAGGGTTAACTCCTTGGAACACAAAACTACACGTCCTGATAGT
TTTGAACGTGGGGATAGCTCCACAAGCTCTGTCGCCACATGGAAGAACGTGTTAAAGCTGTTTAATGACTTGACCGACGATTTCAGAGCAACAGTGGAAGCCATCAGGGC
TGAGATGGCTGAAATGAAGACTCAGGTTAACCTAACGACGCGAGCTGTGGGGAACCAAACCCCAAATCAAATGCTCGATATGCCCAATGATAAGCACTTGAAAAGTGCTT
TCTATTCTCTCAAGTTAAGGGAGTTTATATTAGATTTCACTTGTTTGTTAGTGATTTTCAGGGCGAATTTTGGGGATAGCGCCGCGGCGCCGAGACGGCGCTATCGCGGC
GCTGAAACATCAACGCATAGTTCTGGACGCAGAGTAGCATCGCGGCGCCGGGATGACGCTTCCTCGACGCATCCTTGTTTAACGCATGACAGCGTTGCGGCGCTTGGACG
GCGCTGCCGTGGCGCTAAAACCCGAGAGCAATATTTCTGA
Protein sequenceShow/hide protein sequence
MRWLMLARGCVGEACDQESVVLDRRMVLCVLSMLVQGVFAYGHMPKPPSTTLYLCLEVPDDVRFIQARLEGLDEKVRGIDALNARVDALPITKLTLRVNSLEHKTTRPDS
FERGDSSTSSVATWKNVLKLFNDLTDDFRATVEAIRAEMAEMKTQVNLTTRAVGNQTPNQMLDMPNDKHLKSAFYSLKLREFILDFTCLLVIFRANFGDSAAAPRRRYRG
AETSTHSSGRRVASRRRDDASSTHPCLTHDSVAALGRRCRGAKTREQYF