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Clc06G11500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G11500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor VIP1-like
Genome locationClcChr06:21687652..21688375
RNA-Seq ExpressionClc06G11500
SyntenyClc06G11500
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602180.1 Transcription factor VIP1, partial [Cucurbita argyrosperma subsp. sororia]7.9e-1452.17Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC
        MA+DSFNSKSP++ASA+KP A  +   S     GA CR +   S  +        G     +  +  VGEKK+G  RHSNSMDG+LT  F+A+ST VIDC
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC

Query:  S-KAMAPDKLAELPL
        S KAMAPDKLAEL L
Subjt:  S-KAMAPDKLAELPL

XP_022956511.1 transcription factor VIP1-like [Cucurbita moschata]9.4e-1553.04Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC
        MA+DSFNSKSP++ASA+KP+A N+   S     GA CR +   S  +        G     +  +  VGEKK+G  RHSNSMDG+LT  F+A+ST VIDC
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC

Query:  S-KAMAPDKLAELPL
        S KAMAPDKLAEL L
Subjt:  S-KAMAPDKLAELPL

XP_022990404.1 transcription factor VIP1-like [Cucurbita maxima]4.6e-1452.17Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC
        MA+DSFNSKSP++ASA+KP+A  +   S     GA CR +   S  +        G     +  +  VGEKK+G  RHSNSMDG+LT  F+A+ST VIDC
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC

Query:  S-KAMAPDKLAELPL
        S KAMAPDKLAEL L
Subjt:  S-KAMAPDKLAELPL

XP_023548041.1 transcription factor VIP1-like [Cucurbita pepo subsp. pepo]9.4e-1553.04Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC
        MA+DSFNSKSP++ASA+KP+A N+   S     GA CR +   S  +        G     +  +  VGEKK+G  RHSNSMDG+LT  F+A+ST VIDC
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC

Query:  S-KAMAPDKLAELPL
        S KAMAPDKLAEL L
Subjt:  S-KAMAPDKLAELPL

XP_038886256.1 transcription factor VIP1-like [Benincasa hispida]3.8e-1657.89Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGACRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCS
        MAVDSFNSKSPE+ASATKPRA N N  S+ L     R +   S  +        G     +  +   GEKKMG  RHSNSMDGSLT  F+ADST VIDCS
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGACRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCS

Query:  -KAMAPDKLAELPL
         KAMAPDKLAEL L
Subjt:  -KAMAPDKLAELPL

TrEMBL top hitse value%identityAlignment
A0A0A0KBC6 BZIP domain-containing protein3.4e-1048.65Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSI------LTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCSKA
        MAVDSFNSKSPE+AS TKPRA N N  S        L++ +           G     +  +   GEKK+   RHSNSMDGSLT  F+ DS++     KA
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSI------LTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCSKA

Query:  MAPDKLAELPL
        MAPDKLAEL L
Subjt:  MAPDKLAELPL

A0A1S3B3P0 transcription factor VIP1-like2.5e-1353.57Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSI------LTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCS-K
        MAVDSFNSKSPE+AS TKPRA N N  S        L++ +           G     +  +   GEKK+G  RHSNSMDGSLT  F+ DST VID S K
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSI------LTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCS-K

Query:  AMAPDKLAELPL
        AMAPDKLAEL L
Subjt:  AMAPDKLAELPL

A0A5A7UMX9 Transcription factor VIP1-like2.5e-1353.57Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSI------LTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCS-K
        MAVDSFNSKSPE+AS TKPRA N N  S        L++ +           G     +  +   GEKK+G  RHSNSMDGSLT  F+ DST VID S K
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSI------LTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDCS-K

Query:  AMAPDKLAELPL
        AMAPDKLAEL L
Subjt:  AMAPDKLAELPL

A0A6J1GWS4 transcription factor VIP1-like4.5e-1553.04Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC
        MA+DSFNSKSP++ASA+KP+A N+   S     GA CR +   S  +        G     +  +  VGEKK+G  RHSNSMDG+LT  F+A+ST VIDC
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC

Query:  S-KAMAPDKLAELPL
        S KAMAPDKLAEL L
Subjt:  S-KAMAPDKLAELPL

A0A6J1JRY6 transcription factor VIP1-like2.2e-1452.17Show/hide
Query:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC
        MA+DSFNSKSP++ASA+KP+A  +   S     GA CR +   S  +        G     +  +  VGEKK+G  RHSNSMDG+LT  F+A+ST VIDC
Subjt:  MAVDSFNSKSPENASATKPRARNENFPSSILTVGA-CRRIPTSSRAW--------GWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLT--FKADSTRVIDC

Query:  S-KAMAPDKLAELPL
        S KAMAPDKLAEL L
Subjt:  S-KAMAPDKLAELPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTCGATTCCTTCAATTCGAAGTCCCCTGAAAACGCCTCTGCCACAAAACCTAGGGCTAGAAATGAGAACTTTCCTTCTTCGATTCTCACTGTCGGAGCTTGTCG
ACGGATTCCGACTTCTTCGAGGGCCTGGGGATGGCCAGAGATGAAAGTGACGGTGCAGTACTTGGTGGGGGAGAAGAAGATGGGTCATCAAAGGCATAGCAATTCCATGG
ATGGGTCTTTGACCTTCAAAGCTGATTCCACCAGGGTAATTGATTGCTCGAAAGCCATGGCACCTGATAAACTAGCTGAGCTTCCTTTGAAAAAGAGTTAA
mRNA sequenceShow/hide mRNA sequence
CTCCTCTTCTCTCCTCTCTCCATCCTTTTCCACCCTCTTCTGTCTCTCTCTTCAACAACTTTCCCTCTCCTCTGTAACTAAACTTTAGTTTTGATGATGGATTTGAACTC
TCTGTCTCTCTCTTCAACAACTTTCCTTCTCCTCTGTAACTAAACTTTAGTTTTGATGATGGATTTGAACTTTACTGCCCAAAAGCCACCAAAGACGACGGCTTTCATGG
ACATAGAACAGATGTCGGAGGCTCCACAATGTGGGTATCACCACCATCGTTTCAACTCCGATACCTCCTTCTGCTTCACTAATTTCAATTAACTTCTCCTCTTCCACCCT
CCCGACATCAATTTGTCATCTGCTCTTCCTTCTTCCTCACCGTCACCGTCTCCAACACTGTCGAGGGGCTCGTATGGCCGTCGATTCCTTCAATTCGAAGTCCCCTGAAA
ACGCCTCTGCCACAAAACCTAGGGCTAGAAATGAGAACTTTCCTTCTTCGATTCTCACTGTCGGAGCTTGTCGACGGATTCCGACTTCTTCGAGGGCCTGGGGATGGCCA
GAGATGAAAGTGACGGTGCAGTACTTGGTGGGGGAGAAGAAGATGGGTCATCAAAGGCATAGCAATTCCATGGATGGGTCTTTGACCTTCAAAGCTGATTCCACCAGGGT
AATTGATTGCTCGAAAGCCATGGCACCTGATAAACTAGCTGAGCTTCCTTTGAAAAAGAGTTAA
Protein sequenceShow/hide protein sequence
MAVDSFNSKSPENASATKPRARNENFPSSILTVGACRRIPTSSRAWGWPEMKVTVQYLVGEKKMGHQRHSNSMDGSLTFKADSTRVIDCSKAMAPDKLAELPLKKS