; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G11630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G11630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr06:21894364..21894877
RNA-Seq ExpressionClc06G11630
SyntenyClc06G11630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]1.8e-1483.33Show/hide
Query:  MAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE
        M GN +RSK  WSKVEDA LVEALLYLVE GWRSDNGTFRP YLQHLE
Subjt:  MAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]4.8e-3986.17Show/hide
Query:  MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE
        MGI AMLD+PDEENFASVGLD DHIEFVES EEWTKFRD LAVEIIMAGNG++SK  WSKVEDA+LVEALLYLVE GWR DNGTFRP YLQHLE
Subjt:  MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]1.1e-1959.57Show/hide
Query:  MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE
        MGIGAM D+PDEEN ASVGLDGD                          NG+RSK  WSKVEDA+ VEALLYLV+ GWRSDNGTFR  YLQHLE
Subjt:  MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE

XP_038895852.1 uncharacterized protein LOC120084021 [Benincasa hispida]6.4e-1583.33Show/hide
Query:  MAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE
        MAGNG+RSK  WSKVEDA+L+EALLYLVE GWRSDNGTF+P YLQHLE
Subjt:  MAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.8e-1483.33Show/hide
Query:  MAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE
        M  NG+RSK  WSKVEDA+LVEALLYLVE GWRSDNGTFRP YLQHLE
Subjt:  MAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE

TrEMBL top hitse value%identityAlignment
A0A5A7TJS2 Retrotransposon protein1.5e-0939.8Show/hide
Query:  MLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEII--------MAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHLE
        ++D  DE +       GD I ++E   EW++ RD LA  +         M  + R SK  W+K E+A+LVE L+ LV   GWRS+NGTFR  YL  L+
Subjt:  MLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEII--------MAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHLE

A0A5A7U5I3 Retrotransposon protein2.5e-0937.62Show/hide
Query:  MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEI------IMAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHL
        MG  A  + P      S  ++ ++I FVE+   WT++RD LA ++      + + N + +K  W+ +ED  LVE LL LVE  GWR+D+GTF+P YL  +
Subjt:  MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEI------IMAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHL

Query:  E
        +
Subjt:  E

A0A5D3BRF0 Retrotransposon protein3.0e-1055.56Show/hide
Query:  DHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHL
        D I ++E   EWT +RD LA EII A + R  K  W+K E+A LVE LL LV   GWR DN TFRPRYL  L
Subjt:  DHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHL

A0A5D3D8J6 Retrotransposon protein1.9e-0939.8Show/hide
Query:  MLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEII--------MAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHLE
        ++D  DE +       GD I ++E   EW++ RD LA  +         M  + R SK  W+K E+A+LVE L+ LV   GWRS+NGTFR  YL  L+
Subjt:  MLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEII--------MAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHLE

E5GCB5 Retrotransposon protein2.7e-1147.13Show/hide
Query:  DMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHL
        D  DE +        D I ++E+  EW+++RD LA E IM  + R  K  W+K E+A LVE L+ LV   GWRSDNGTFRP YL  L
Subjt:  DMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEI-GWRSDNGTFRPRYLQHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATCGGTGCAATGCTTGACATGCCCGATGAGGAGAATTTTGCATCAGTTGGTCTTGATGGGGATCATATTGAATTTGTTGAATCCTTGGAGGAATGGACCAAGTT
CAGGGATGGCTTGGCAGTTGAAATCATAATGGCAGGTAATGGTAGGAGGTCTAAACAAGCATGGTCGAAGGTGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGG
TGGAGATCGGTTGGAGATCCGACAATGGGACGTTTCGACCAAGATACTTACAACACTTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATCGGTGCAATGCTTGACATGCCCGATGAGGAGAATTTTGCATCAGTTGGTCTTGATGGGGATCATATTGAATTTGTTGAATCCTTGGAGGAATGGACCAAGTT
CAGGGATGGCTTGGCAGTTGAAATCATAATGGCAGGTAATGGTAGGAGGTCTAAACAAGCATGGTCGAAGGTGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGG
TGGAGATCGGTTGGAGATCCGACAATGGGACGTTTCGACCAAGATACTTACAACACTTGGAGTGA
Protein sequenceShow/hide protein sequence
MGIGAMLDMPDEENFASVGLDGDHIEFVESLEEWTKFRDGLAVEIIMAGNGRRSKQAWSKVEDAELVEALLYLVEIGWRSDNGTFRPRYLQHLE