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Clc06G11655 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G11655
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationClcChr06:21934225..21936254
RNA-Seq ExpressionClc06G11655
SyntenyClc06G11655
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025749.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.0e-1676.67Show/hide
Query:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Subjt:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

TYK06180.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]3.0e-1676.67Show/hide
Query:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Subjt:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]1.0e-1666.67Show/hide
Query:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        W+K   +   E  +PK KFV AKR + +SSN K+NEA KEVREK+SSI+CWKCK FGH+SKDCVNKRVMVIR
Subjt:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

XP_022158838.1 uncharacterized protein LOC111025303 [Momordica charantia]2.1e-1768.06Show/hide
Query:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        W K   +   E  +PKGKFV AKR + +SSN KKNEA KEVRE +SSI+CWKCK FGH+SKDCVNKRVMVIR
Subjt:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

XP_022932136.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata]4.0e-1665.28Show/hide
Query:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        W+K   +   E   PK KFV AKR +A+SSN KKNEA K V+EKSSSI+CWKCK FGH+SK+CVNK+VMVIR
Subjt:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

TrEMBL top hitse value%identityAlignment
A0A5A7SKE7 Transposon Ty3-I Gag-Pol polyprotein1.5e-1676.67Show/hide
Query:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Subjt:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

A0A5D3C4C3 Transposon Ty3-I Gag-Pol polyprotein1.5e-1676.67Show/hide
Query:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        SE KGKFVVAKR +A+SSN+KKNEA KE +EKS+S++CWKCK FGH+SKDCVNK+VMVIR
Subjt:  SEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

A0A6J1DGU9 uncharacterized protein LOC1110207535.1e-1766.67Show/hide
Query:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        W+K   +   E  +PK KFV AKR + +SSN K+NEA KEVREK+SSI+CWKCK FGH+SKDCVNKRVMVIR
Subjt:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

A0A6J1DX75 uncharacterized protein LOC1110253031.0e-1768.06Show/hide
Query:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        W K   +   E  +PKGKFV AKR + +SSN KKNEA KEVRE +SSI+CWKCK FGH+SKDCVNKRVMVIR
Subjt:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

A0A6J1EVI6 LOW QUALITY PROTEIN: uncharacterized protein LOC1114384591.9e-1665.28Show/hide
Query:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR
        W+K   +   E   PK KFV AKR +A+SSN KKNEA K V+EKSSSI+CWKCK FGH+SK+CVNK+VMVIR
Subjt:  WSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGATCCTAGAAAGACCTCTAGCTTTGCATCTAACGAACATTGCGGGCACTTATCATTTGGTATTAGAGCATTTGGTCATCATCCTTGGTCAGCTCTAGAGTGGAG
CAAGAAAGACAAGTTGGAGGGAGAGGAAATAAGTGAACCAAAAGGGAAGTTTGTGGTTGCCAAAAGAGCGAAGGCCAAGAGCTCCAATGCTAAAAAGAATGAAGCTCTAA
AGGAGGTTAGGGAGAAGTCTAGTTCTATTGAATGTTGGAAGTGCAAGGTGTTTGGGCACTTGAGCAAAGATTGTGTCAATAAAAGGGTCATGGTGATAAGAAAATGGGAT
ACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGATCCTAGAAAGACCTCTAGCTTTGCATCTAACGAACATTGCGGGCACTTATCATTTGGTATTAGAGCATTTGGTCATCATCCTTGGTCAGCTCTAGAGTGGAG
CAAGAAAGACAAGTTGGAGGGAGAGGAAATAAGTGAACCAAAAGGGAAGTTTGTGGTTGCCAAAAGAGCGAAGGCCAAGAGCTCCAATGCTAAAAAGAATGAAGCTCTAA
AGGAGGTTAGGGAGAAGTCTAGTTCTATTGAATGTTGGAAGTGCAAGGTGTTTGGGCACTTGAGCAAAGATTGTGTCAATAAAAGGGTCATGGTGATAAGAAAATGGGAT
ACTTGA
Protein sequenceShow/hide protein sequence
MLDPRKTSSFASNEHCGHLSFGIRAFGHHPWSALEWSKKDKLEGEEISEPKGKFVVAKRAKAKSSNAKKNEALKEVREKSSSIECWKCKVFGHLSKDCVNKRVMVIRKWD
T