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Clc06G11675 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G11675
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGTP-binding nuclear protein Ran-3-like
Genome locationClcChr06:22035027..22035410
RNA-Seq ExpressionClc06G11675
SyntenyClc06G11675
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589876.1 hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0874.47Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLR+MT +TESFHDVMYHSAIASRLA+DFK+RADS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
XP_011656185.1 uncharacterized protein LOC105435656 [Cucumis sativus]1.9e-0978.72Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLRMMTT+TESFHDVMYHSAIASRLASDFK+R DS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
XP_016903293.1 PREDICTED: uncharacterized protein LOC103502747 [Cucumis melo]1.4e-0978.72Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLRMMTT+TESFHDVMYHSAIASRLASDFK+R DS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
XP_038880363.1 uncharacterized protein LOC120072011 [Benincasa hispida]1.7e-1082.98Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLRMMTT+TESFHDVMYHSAIASRLASDFKTRADS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
XP_042973108.1 uncharacterized protein LOC122304913 [Carya illinoinensis]7.0e-0976.09Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
        F P +  + KARQLRMMT +TESFHDVMYHSAIASRLASDFK R+D
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
TrEMBL top hitse value%identityAlignment
A0A0A0LTN7 Uncharacterized protein9.0e-1078.72Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLRMMTT+TESFHDVMYHSAIASRLASDFK+R DS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
A0A1S4E4Y4 uncharacterized protein LOC1035027476.9e-1078.72Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLRMMTT+TESFHDVMYHSAIASRLASDFK+R DS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
A0A2R6QRS0 Transcription activator of gluconeogenesis9.9e-0967.31Show/hide
Query:  NPLGLEFPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
        +P    F P +    KAR+LRMMTT+T SFHDVMYHSAIASRLASDFK R+D
Subjt:  NPLGLEFPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
A0A5D3CSV6 Uncharacterized protein6.9e-1078.72Show/hide
Query:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
        F P      KARQLRMMTT+TESFHDVMYHSAIASRLASDFK+R DS
Subjt:  FPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRADS
A0A7J0FM65 Uncharacterized protein1.3e-0868.63Show/hide
Query:  PLGLEFPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
        P    F P +    KAR+LRMMTT+T SFHDVMYHSAIASRLASDFK R+D
Subjt:  PLGLEFPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52720.1 unknown protein9.2e-0753.06Show/hide
Query:  GLEFPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
        G +F        KA+QLR  T +  +FHDVMYHSAIASRLASD   R +
Subjt:  GLEFPPAASRRRKARQLRMMTTKTESFHDVMYHSAIASRLASDFKTRAD
AT3G15630.1 unknown protein2.0e-0665.71Show/hide
Query:  KARQLRMMTTKTESFHDVMYHSAIASRLASDFKTR
        KA+QLR  T +  +FHDVMYHSAIASRLASD + +
Subjt:  KARQLRMMTTKTESFHDVMYHSAIASRLASDFKTR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTAATCCTCCTCACTTTTGCCCCTGCCGGCCATCCGTGCCTGTGCCGCCTCCGCCGACCGAAGATCCGACCATAACCGCCGGAAAACCTCCTCCTCTTCCAAC
TGGTGGGCCCCAGTCTTCGGCTGGTCCTCCGAACCCGACTATATCGACTCCGGCAACAAGGCCGAACCTCAAGACCTCACCGGCGGTACTTCAAAATCGGATGTGGAGAC
GAAATCCGTTAGGGCTCGAATTTCCCCCGGCTGCTTCACGGAGGCGGAAGGCTCGGCAGCTGCGCATGATGACGACGAAGACGGAGTCATTTCACGACGTTATGTACCAC
TCGGCGATCGCTTCTCGCCTCGCTTCCGACTTCAAAACTCGCGCCGATTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTAATCCTCCTCACTTTTGCCCCTGCCGGCCATCCGTGCCTGTGCCGCCTCCGCCGACCGAAGATCCGACCATAACCGCCGGAAAACCTCCTCCTCTTCCAAC
TGGTGGGCCCCAGTCTTCGGCTGGTCCTCCGAACCCGACTATATCGACTCCGGCAACAAGGCCGAACCTCAAGACCTCACCGGCGGTACTTCAAAATCGGATGTGGAGAC
GAAATCCGTTAGGGCTCGAATTTCCCCCGGCTGCTTCACGGAGGCGGAAGGCTCGGCAGCTGCGCATGATGACGACGAAGACGGAGTCATTTCACGACGTTATGTACCAC
TCGGCGATCGCTTCTCGCCTCGCTTCCGACTTCAAAACTCGCGCCGATTCCTGA
Protein sequenceShow/hide protein sequence
MATNPPHFCPCRPSVPVPPPPTEDPTITAGKPPPLPTGGPQSSAGPPNPTISTPATRPNLKTSPAVLQNRMWRRNPLGLEFPPAASRRRKARQLRMMTTKTESFHDVMYH
SAIASRLASDFKTRADS