CuGenDBv2

Gene ID	Clc06G12110
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal protein
Genome location	ClcChr06:22723694..22725279
RNA-Seq Expression	Clc06G12110
Synteny	Clc06G12110
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.0e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP L   SEVKQEILPSHSS+TGLASL+PQKHEPTML+GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

2.0e-47

70.47

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Query:  MFHTVFNVHLSCSPSLSIRRYYVRKSFIFSFKLCFNSTLELELTVLRYAMKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSL
        + HT+F+            R + +KSFIFS  LC N            AMKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFASEGPSPSL
Subjt:  MFHTVFNVHLSCSPSLSIRRYYVRKSFIFSFKLCFNSTLELELTVLRYAMKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSL

Query:  LSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
         SR+EVKQEILPS S +TGLASLIPQK+EPTM LGWRMGLASILLKKHN
Subjt:  LSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

1.3e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSP L SRSEVKQEILPS+S +TGLASLIPQKHEPT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

XP_022987917.1 uncharacterized protein LOC111485318 [Cucurbita maxima]

5.1e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP L   SEVKQEILPSHSS+TGLASL+PQKHEPTML GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

9.3e-45

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGP PSL SRSEVKQE+LPSHSS+TGLASLIPQKHEPTMLLGWRMGLASILLKK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

7.2e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQEILPS  S+ GLASLIPQK+EPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

A0A5A7U4L3 Ribosomal protein

7.2e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSPSL SR+EVKQEILPS  S+ GLASLIPQK+EPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

6.5e-44

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSP L SRSEVKQEILPS+S +TGLASLIPQKHEPT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

3.2e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE PSPSL SRSEVKQEILPSHSS+TGLASLIPQKHEPTML GWRMGLASIL KK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

2.5e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP L   SEVKQEILPSHSS+TGLASL+PQKHEPTML GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEILPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

1.0e-09

78.95

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

1.0e-09

78.95

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

1.3e-09

73.68

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

5.9e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR+SVKKMC+ CR ++RRGRV V CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

1.3e-09

73.68

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

5.0e-28

64.08

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+FA EG +PS L +     QE+  LP      GLASL+ ++  PT   GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

5.0e-28

64.08

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+FA EG +PS L +     QE+  LP      GLASL+ ++  PT   GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPS-LLSRSEVKQEI--LPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

2.0e-08

65.79

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++RRGR+ V C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGTTCCATACTGTGTTTAACGTTCATCTCAGCTGCTCGCCGTCGCTCTCGATTCGAAGGTATTACGTTCGGAAATCATTCATCTTCTCATTTAAGCTTTGCTTCAACAG
TACGTTGGAATTGGAATTGACGGTATTGAGATATGCTATGAAAGTCCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTGAAACGTCGAGGTCGAGTATATG
TATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTGTCAAGAAGTGAGGTGAAGCAAGAGATT
CTTCCCAGTCATAGCTCGCAAACGGGGCTGGCTTCTCTCATCCCCCAAAAGCATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAA
ACACAATTAG

mRNA sequence

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Protein sequence

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MFHTVFNVHLSCSPSLSIRRYYVRKSFIFSFKLCFNSTLELELTVLRYAMKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPSLLSRSEVKQEI
LPSHSSQTGLASLIPQKHEPTMLLGWRMGLASILLKKHN

Clc06G12110 (gene) of Watermelon (cordophanus) v2 genome