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Clc06G12185 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G12185
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationClcChr06:22818882..22824259
RNA-Seq ExpressionClc06G12185
SyntenyClc06G12185
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058980.1 uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]6.5e-1545.45Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND
        MK+L WN RGLGSPSKR LIKN I  Y PDFV+LTET L+  +K+IIKS W S SI WI   A+G S             + S  E  +S+SAN  L N+
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND

Query:  YLWTC------QKKRKKQIIDEDLQPQQNLLS
          W         K+RK+     DL   Q+L S
Subjt:  YLWTC------QKKRKKQIIDEDLQPQQNLLS

TYJ97060.1 hypothetical protein E5676_scaffold506G001280 [Cucumis melo var. makuwa]6.8e-1246.46Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISANLLEND
        MK L WN RGLGSPSKR  IKN+IS Y  D V++TETKL   S   ++SIW+   +K+ SL +NG S             V SY E+++S+S N+L  D
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISANLLEND

TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]6.5e-1545.45Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND
        MK+L WN RGLGSPSKR LIKN I  Y PDFV+LTET L+  +K+IIKS W S SI WI   A+G S             + S  E  +S+SAN  L N+
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND

Query:  YLWTC------QKKRKKQIIDEDLQPQQNLLS
          W         K+RK+     DL   Q+L S
Subjt:  YLWTC------QKKRKKQIIDEDLQPQQNLLS

XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]2.0e-1643.06Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISANLLEND-
        MKIL WNVRG+GS  KR  IK+VIS Y PDFV L+ETKL NV+ K++KSIWSSISIK+I  + +GRS             + +Y+  +++IS N +E D 
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISANLLEND-

Query:  YLW-------TCQKKRKKQIIDEDLQPQQNLLSKLTDSNTLLNG
        Y W          + R+K    E +      L++   SN LL G
Subjt:  YLW-------TCQKKRKKQIIDEDLQPQQNLLSKLTDSNTLLNG

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.1e-1361.19Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS
        M IL WNVRGLGS SKR  IK+ I+  CPD V+L+ETK  +++ K IKS+WSSISI W SL A+G S
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS

TrEMBL top hitse value%identityAlignment
A0A438JKK7 Transposon TX1 uncharacterized 149 kDa protein9.9e-0936.9Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRSDVTSYMEKDYSISANLL
        MKI+ WNVRGLGS +KR ++K+ +    PD V++ ETK +N  ++ + S+W+  +  W++L A+G S     +E++  ++++LL
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRSDVTSYMEKDYSISANLL

A0A5A7UV84 Reverse transcriptase domain-containing protein3.2e-1545.45Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND
        MK+L WN RGLGSPSKR LIKN I  Y PDFV+LTET L+  +K+IIKS W S SI WI   A+G S             + S  E  +S+SAN  L N+
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND

Query:  YLWTC------QKKRKKQIIDEDLQPQQNLLS
          W         K+RK+     DL   Q+L S
Subjt:  YLWTC------QKKRKKQIIDEDLQPQQNLLS

A0A5D3BB44 Uncharacterized protein3.3e-1246.46Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISANLLEND
        MK L WN RGLGSPSKR  IKN+IS Y  D V++TETKL   S   ++SIW+   +K+ SL +NG S             V SY E+++S+S N+L  D
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISANLLEND

A0A5D3CI86 Reverse transcriptase domain-containing protein3.2e-1545.45Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND
        MK+L WN RGLGSPSKR LIKN I  Y PDFV+LTET L+  +K+IIKS W S SI WI   A+G S             + S  E  +S+SAN  L N+
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS------------DVTSYMEKDYSISAN-LLEND

Query:  YLWTC------QKKRKKQIIDEDLQPQQNLLS
          W         K+RK+     DL   Q+L S
Subjt:  YLWTC------QKKRKKQIIDEDLQPQQNLLS

A0A6J1CVN2 uncharacterized protein LOC1110146571.0e-1361.19Show/hide
Query:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS
        M IL WNVRGLGS SKR  IK+ I+  CPD V+L+ETK  +++ K IKS+WSSISI W SL A+G S
Subjt:  MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTTTACCCTGGAATGTACGTGGGTTAGGCTCTCCCTCCAAAAGAACCTTAATAAAAAATGTTATTTCCGGTTATTGTCCTGACTTTGTTCTTTTAACAGAAAC
TAAACTTCAAAATGTCTCCAAAAAAATCATCAAATCAATCTGGAGCTCAATTAGTATAAAATGGATATCCTTAAAAGCTAATGGCAGATCTGATGTGACAAGTTACATGG
AGAAAGATTATTCGATTTCAGCAAACCTGCTAGAAAACGACTATTTATGGACTTGCCAAAAGAAAAGAAAGAAACAAATTATTGACGAAGATCTCCAGCCTCAACAAAAC
TTGCTCTCCAAATTGACCGATTCCAATACACTCCTTAATGGGAAGAAAAAATTACCTCTCATTTTACCAGAACTTTGGCTAGAGTTACTTCGAATCACTTTCCCCTCATC
CTCGAGAATTCATAACTTAGCTAGGGTCCCAGTCCATTCTGTTTCAACAACATCAACTTGGAGCTATATATATATAGCTTCAACAAAAATGACTGGTGGGACTTTACTAG
TTAAATTGGTTTCCCCGGCTAGGCAAAAGAAGGTGACAAACGAAGAGAAGAAATCTTGGATTCAAGAAATTGAAAGGATTGATAAGCTCGAAACACCGAAGCCGCTACAT
AAGCTCTGTTTTGGGCTCAACAATATAAAAGGCTTTGGCTACATGATGGGGATGAAAACTTGGCTTTTTTTCACAAAGTCTTCACGACAAGGCAACGTCAAAATCCTGAT
AAACATAGGAATAGCTGCACCACAAACAACTCTATTGAAAATGTCTTCGTACAACATTTCAAAGATATCTTCATTGGAAAACACAAAAAATAGTGGCCATTATACTCACC
TTATAAATTCGCCGACGGTTACTTCCTCTAAAGACAAAGGTGGCCTTGACATCAATACCTTGGAATGTTTTTATGAAGAAGGCAACCCCCTCTGGAAGAGATTGATCCTT
GCAAAATACAAACACAACTTTGTTGGAGAAATTCCCATGATGAGCACGCAAAATCCCCTTGGACGTCCATCGTTAAGGGCCTCGATTGGTTCAAATCCAACTTATCCTGG
AAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTTTACCCTGGAATGTACGTGGGTTAGGCTCTCCCTCCAAAAGAACCTTAATAAAAAATGTTATTTCCGGTTATTGTCCTGACTTTGTTCTTTTAACAGAAAC
TAAACTTCAAAATGTCTCCAAAAAAATCATCAAATCAATCTGGAGCTCAATTAGTATAAAATGGATATCCTTAAAAGCTAATGGCAGATCTGATGTGACAAGTTACATGG
AGAAAGATTATTCGATTTCAGCAAACCTGCTAGAAAACGACTATTTATGGACTTGCCAAAAGAAAAGAAAGAAACAAATTATTGACGAAGATCTCCAGCCTCAACAAAAC
TTGCTCTCCAAATTGACCGATTCCAATACACTCCTTAATGGGAAGAAAAAATTACCTCTCATTTTACCAGAACTTTGGCTAGAGTTACTTCGAATCACTTTCCCCTCATC
CTCGAGAATTCATAACTTAGCTAGGGTCCCAGTCCATTCTGTTTCAACAACATCAACTTGGAGCTATATATATATAGCTTCAACAAAAATGACTGGTGGGACTTTACTAG
TTAAATTGGTTTCCCCGGCTAGGCAAAAGAAGGTGACAAACGAAGAGAAGAAATCTTGGATTCAAGAAATTGAAAGGATTGATAAGCTCGAAACACCGAAGCCGCTACAT
AAGCTCTGTTTTGGGCTCAACAATATAAAAGGCTTTGGCTACATGATGGGGATGAAAACTTGGCTTTTTTTCACAAAGTCTTCACGACAAGGCAACGTCAAAATCCTGAT
AAACATAGGAATAGCTGCACCACAAACAACTCTATTGAAAATGTCTTCGTACAACATTTCAAAGATATCTTCATTGGAAAACACAAAAAATAGTGGCCATTATACTCACC
TTATAAATTCGCCGACGGTTACTTCCTCTAAAGACAAAGGTGGCCTTGACATCAATACCTTGGAATGTTTTTATGAAGAAGGCAACCCCCTCTGGAAGAGATTGATCCTT
GCAAAATACAAACACAACTTTGTTGGAGAAATTCCCATGATGAGCACGCAAAATCCCCTTGGACGTCCATCGTTAAGGGCCTCGATTGGTTCAAATCCAACTTATCCTGG
AAGATAA
Protein sequenceShow/hide protein sequence
MKILPWNVRGLGSPSKRTLIKNVISGYCPDFVLLTETKLQNVSKKIIKSIWSSISIKWISLKANGRSDVTSYMEKDYSISANLLENDYLWTCQKKRKKQIIDEDLQPQQN
LLSKLTDSNTLLNGKKKLPLILPELWLELLRITFPSSSRIHNLARVPVHSVSTTSTWSYIYIASTKMTGGTLLVKLVSPARQKKVTNEEKKSWIQEIERIDKLETPKPLH
KLCFGLNNIKGFGYMMGMKTWLFFTKSSRQGNVKILINIGIAAPQTTLLKMSSYNISKISSLENTKNSGHYTHLINSPTVTSSKDKGGLDINTLECFYEEGNPLWKRLIL
AKYKHNFVGEIPMMSTQNPLGRPSLRASIGSNPTYPGR