; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G12610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G12610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type domain-containing protein
Genome locationClcChr06:23506748..23509088
RNA-Seq ExpressionClc06G12610
SyntenyClc06G12610
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06338.1 uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]2.6e-9888.73Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRKRGSDQTHHDPP HLSG+VPFSNQ DVRSEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF D IE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        SIESTF GPERIRYNSLGKDAISSH +RMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRS+VEDRSDPPCPLC +  P+ DDSKG
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EEQE
         EQE
Subjt:  EEQE

XP_008443927.1 PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo]9.0e-9989.22Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRKRGSDQTHHDPP HLSG+VPFSNQ DVRSEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF D IE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        SIESTF GPERIRYNSLGKDAISSH MRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRS+VEDRSDPPCPLC +  P+ DDSKG
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EEQE
         EQE
Subjt:  EEQE

XP_022134599.1 uncharacterized protein LOC111006826 [Momordica charantia]5.5e-9688.06Show/hide
Query:  MGKRKR-GSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHI
        MGKRKR  SD TH DPP HLSGVVPFSNQMDV SEED+SLARPVFMKRSRHQYSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF +HI
Subjt:  MGKRKR-GSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHI

Query:  ESIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSK
        ESIE+TFWGPERIRY+SLGKDAISSHG+RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  K DDSK
Subjt:  ESIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSK

Query:  G
        G
Subjt:  G

XP_038878631.1 uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida]6.0e-10391.71Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEE-DRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHI
        MGKRKRGSDQTHHDPP HLSG+VPFSNQMDVRSEE DRS ARPVFMKRSRHQYSHQYCRRGSTS ANAS S ENRVKTVLEERPAFK AA CNSEF DHI
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEE-DRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHI

Query:  ESIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSK
        ESIE TFWGPERIRYNS GKDA SSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEP P+ DDSK
Subjt:  ESIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSK

Query:  GEEQE
        G EQE
Subjt:  GEEQE

XP_038878632.1 uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]2.5e-10492.16Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRKRGSDQTHHDPP HLSG+VPFSNQMDVRSEEDRS ARPVFMKRSRHQYSHQYCRRGSTS ANAS S ENRVKTVLEERPAFK AA CNSEF DHIE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        SIE TFWGPERIRYNS GKDA SSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEP P+ DDSKG
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EEQE
         EQE
Subjt:  EEQE

TrEMBL top hitse value%identityAlignment
A0A1S3B956 uncharacterized protein LOC103487402 isoform X24.4e-9989.22Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRKRGSDQTHHDPP HLSG+VPFSNQ DVRSEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF D IE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        SIESTF GPERIRYNSLGKDAISSH MRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRS+VEDRSDPPCPLC +  P+ DDSKG
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EEQE
         EQE
Subjt:  EEQE

A0A5A7U906 RING-type domain-containing protein4.4e-9989.22Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRKRGSDQTHHDPP HLSG+VPFSNQ DVRSEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF D IE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        SIESTF GPERIRYNSLGKDAISSH MRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRS+VEDRSDPPCPLC +  P+ DDSKG
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EEQE
         EQE
Subjt:  EEQE

A0A5D3C5B4 RING-type domain-containing protein1.3e-9888.73Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRKRGSDQTHHDPP HLSG+VPFSNQ DVRSEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF D IE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        SIESTF GPERIRYNSLGKDAISSH +RMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRS+VEDRSDPPCPLC +  P+ DDSKG
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EEQE
         EQE
Subjt:  EEQE

A0A6J1BZ68 uncharacterized protein LOC1110068262.6e-9688.06Show/hide
Query:  MGKRKR-GSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHI
        MGKRKR  SD TH DPP HLSGVVPFSNQMDV SEED+SLARPVFMKRSRHQYSHQYCRRGSTSQANASTS ENRV+TVLEERPAFK AA CNSEF +HI
Subjt:  MGKRKR-GSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHI

Query:  ESIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSK
        ESIE+TFWGPERIRY+SLGKDAISSHG+RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  K DDSK
Subjt:  ESIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSK

Query:  G
        G
Subjt:  G

A0A6J1HAS2 uncharacterized protein LOC111461650 isoform X23.8e-9585.15Show/hide
Query:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE
        MGKRK GSDQTHHD P HLSG+VPFSNQMDVRSEEDRSLARP+FMKRSRHQYSHQYCRRGSTS+ANASTS ENRV+T+LE+RPAFK AA CNSEF DHIE
Subjt:  MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIE

Query:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG
        S ESTF  PERIRYNSLGKD ISSHG ++VCGICQKLMRRKLCFLGNTLSSSELP+AAVLVCGHVYHA+CLEN SNVEDRSDP CPLCMEP  K DDS  
Subjt:  SIESTFWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKG

Query:  EE
        +E
Subjt:  EE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19680.1 RING/U-box superfamily protein2.0e-1137.35Show/hide
Query:  GPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCME
        G  R+   S  + + S    +  CG C KL+  +     + ++  +LP+ AVL CGHVYHA CLE  +N  ++ DP CP+C E
Subjt:  GPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCME

AT1G75400.1 RING/U-box superfamily protein2.3e-1247.54Show/hide
Query:  RMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC
        + VCG C KL+  +     +++++ ELP+AAVL CGHVYHAECLE  +   ++ DP CP+C
Subjt:  RMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC

AT4G39140.1 RING/U-box superfamily protein2.6e-1141.77Show/hide
Query:  LGKDAISSHGMRM------VCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC
        L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH ECLE  +   D+ DP CP+C
Subjt:  LGKDAISSHGMRM------VCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC

AT4G39140.2 RING/U-box superfamily protein2.6e-1141.77Show/hide
Query:  LGKDAISSHGMRM------VCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC
        L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH ECLE  +   D+ DP CP+C
Subjt:  LGKDAISSHGMRM------VCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC

AT4G39140.3 RING/U-box superfamily protein2.6e-1141.77Show/hide
Query:  LGKDAISSHGMRM------VCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC
        L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH ECLE  +   D+ DP CP+C
Subjt:  LGKDAISSHGMRM------VCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGCGCAAGCGAGGTTCTGATCAGACCCACCACGATCCTCCTCGTCATCTCTCCGGTGTAGTTCCCTTTTCCAATCAAATGGATGTGCGGTCAGAAGAG
GATCGGAGTCTTGCTCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAGCCATCAATATTGTCGCCGAGGTTCAACCAGCCAAGCAAATGCATCTACATCC
CACGAAAACCGAGTTAAAACCGTACTTGAAGAACGACCTGCTTTTAAACTTGCTGCTCAGTGCAACTCAGAGTTTTCAGACCATATAGAGAGCATTGAGAGCACC
TTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATGCAATTTCATCTCATGGAATGAGAATGGTATGTGGGATTTGTCAGAAGCTGATGAGACGA
AAGCTTTGCTTTCTCGGAAACACGCTTTCTTCCAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCA
AATGTGGAAGATAGAAGTGACCCACCTTGTCCATTGTGCATGGAACCGCTTCCCAAAGCCGACGATTCAAAAGGAGAAGAACAGGAATGA
mRNA sequenceShow/hide mRNA sequence
CTCAGCATCTGCGATATATCAAATCCACTGGGTTTGTGTTTCTGCTCCAAAAAGGCCCAAAACCGTTCATTCAATTCAATTCAATTCAATTCAAAGATGATCATC
ATCGCCTAAATTTAACCTCCAAATTATATTAATCCTCACTCTCCTCGCTTTATTAACAATCTTAATCACTATGGGAAAGCGCAAGCGAGGTTCTGATCAGACCCA
CCACGATCCTCCTCGTCATCTCTCCGGTGTAGTTCCCTTTTCCAATCAAATGGATGTGCGGTCAGAAGAGGATCGGAGTCTTGCTCGTCCAGTATTCATGAAACG
TTCACGTCATCAGTATAGCCATCAATATTGTCGCCGAGGTTCAACCAGCCAAGCAAATGCATCTACATCCCACGAAAACCGAGTTAAAACCGTACTTGAAGAACG
ACCTGCTTTTAAACTTGCTGCTCAGTGCAACTCAGAGTTTTCAGACCATATAGAGAGCATTGAGAGCACCTTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTT
AGGGAAGGATGCAATTTCATCTCATGGAATGAGAATGGTATGTGGGATTTGTCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGAAACACGCTTTCTTCCAG
TGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAATGTGGAAGATAGAAGTGACCCACCTTGTCCATT
GTGCATGGAACCGCTTCCCAAAGCCGACGATTCAAAAGGAGAAGAACAGGAATGAGTTGATTTGTACATATGTTATCACATAGCACCAACATAGGAAATAGGCTT
GGTTCTGACTTGAATGGGC
Protein sequenceShow/hide protein sequence
MGKRKRGSDQTHHDPPRHLSGVVPFSNQMDVRSEEDRSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSHENRVKTVLEERPAFKLAAQCNSEFSDHIESIEST
FWGPERIRYNSLGKDAISSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDRSDPPCPLCMEPLPKADDSKGEEQE