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Clc06G12670 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G12670
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:23602408..23602743
RNA-Seq ExpressionClc06G12670
SyntenyClc06G12670
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050063.1 hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa]7.0e-3777.68Show/hide
Query:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV
        MATSA TKLPL+LL+C+AI+ASSVTAR  +V AA P   ++KDFSLFPCISFVP ATK VIDVLKN VAPHPSCCEAIS+L++CSS+FLKDIPS+DMILV
Subjt:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV

Query:  KSVCALWGVSIS
        KS+CA WGVSIS
Subjt:  KSVCALWGVSIS

KAA0050065.1 hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa]2.7e-3372.97Show/hide
Query:  MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVK
        MA S TKLPL LL C+ I+ASSV AR   V AAAP      D SLFPC SFVP+AT+CVIDVLKN VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVK
Subjt:  MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVK

Query:  SVCALWGVSIS
        S+CALWGVSIS
Subjt:  SVCALWGVSIS

KAA0050079.1 hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]1.0e-3576.79Show/hide
Query:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV
        MATSA TKLPLVL +C+AI+ASSVTA   +V AA P    ++DFSLFPCISFVP+ATKCVIDVLKNVVAPHPSCCEAI++L++CSS+FLKDIPS DMILV
Subjt:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV

Query:  KSVCALWGVSIS
        KS+CA WGVSIS
Subjt:  KSVCALWGVSIS

KAE8653017.1 hypothetical protein Csa_004564 [Cucumis sativus]1.5e-3478.76Show/hide
Query:  MATSATKLPLVL-LLCVAIIASSVTARLGVVPAAAPN-PLVTKD-FSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMI
        MATSATKLPLVL LLC+AI+ASSV AR  +V AAAP+ PL T++ FSLFPCIS VPQATKCVIDVL N VAPHPSCCEAISKL +CSS FLKDIP+  MI
Subjt:  MATSATKLPLVL-LLCVAIIASSVTARLGVVPAAAPN-PLVTKD-FSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMI

Query:  LVKSVCALWGVSI
        LVKSVCA WGVSI
Subjt:  LVKSVCALWGVSI

TYK10345.1 hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]1.8e-3778.57Show/hide
Query:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV
        MATSA TKLPLVLL+C+AI+ASSVTAR  +V AA P    ++DFSLFPCISFVP+ATKCVIDVLKN VAPHPSCCEAIS+L++CSS+FLKDIPS DMILV
Subjt:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV

Query:  KSVCALWGVSIS
        KS+CA WGVSIS
Subjt:  KSVCALWGVSIS

TrEMBL top hitse value%identityAlignment
A0A5A7U2D8 Uncharacterized protein3.4e-3777.68Show/hide
Query:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV
        MATSA TKLPL+LL+C+AI+ASSVTAR  +V AA P   ++KDFSLFPCISFVP ATK VIDVLKN VAPHPSCCEAIS+L++CSS+FLKDIPS+DMILV
Subjt:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV

Query:  KSVCALWGVSIS
        KS+CA WGVSIS
Subjt:  KSVCALWGVSIS

A0A5A7U8Y3 Uncharacterized protein1.3e-3372.97Show/hide
Query:  MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVK
        MA S TKLPL LL C+ I+ASSV AR   V AAAP      D SLFPC SFVP+AT+CVIDVLKN VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVK
Subjt:  MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVK

Query:  SVCALWGVSIS
        S+CALWGVSIS
Subjt:  SVCALWGVSIS

A0A5A7U9B0 Uncharacterized protein4.9e-3676.79Show/hide
Query:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV
        MATSA TKLPLVL +C+AI+ASSVTA   +V AA P    ++DFSLFPCISFVP+ATKCVIDVLKNVVAPHPSCCEAI++L++CSS+FLKDIPS DMILV
Subjt:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV

Query:  KSVCALWGVSIS
        KS+CA WGVSIS
Subjt:  KSVCALWGVSIS

A0A5D3CEQ4 Uncharacterized protein2.3e-3372.97Show/hide
Query:  MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVK
        MA S TKLPL LL C+ I+ASSV AR   V AAAP      D SLFPC SFVP+AT+CVIDVLKN VAPHPSCC+AIS+L++CSS+FLKDIPS DMILVK
Subjt:  MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVK

Query:  SVCALWGVSIS
        S+CALWGVSIS
Subjt:  SVCALWGVSIS

A0A5D3CFS6 Uncharacterized protein8.9e-3878.57Show/hide
Query:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV
        MATSA TKLPLVLL+C+AI+ASSVTAR  +V AA P    ++DFSLFPCISFVP+ATKCVIDVLKN VAPHPSCCEAIS+L++CSS+FLKDIPS DMILV
Subjt:  MATSA-TKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILV

Query:  KSVCALWGVSIS
        KS+CA WGVSIS
Subjt:  KSVCALWGVSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCCTACTCTGCGTAGCCATTATAGCATCATCGGTAACGGCTCGCCTGGGAGTGGTGCCAGCAGCAGCGCCTAATCC
ATTGGTAACAAAGGATTTCTCTTTGTTTCCATGCATATCATTTGTTCCTCAGGCGACGAAATGTGTGATTGATGTGCTTAAGAATGTGGTTGCTCCCCATCCTTCTTGTT
GTGAAGCCATTTCTAAACTCTATAATTGTTCTTCAAAGTTTCTCAAAGACATTCCCTCTGAGGATATGATTTTGGTTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATT
TCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACATCAGCAACCAAGTTACCACTTGTACTCCTACTCTGCGTAGCCATTATAGCATCATCGGTAACGGCTCGCCTGGGAGTGGTGCCAGCAGCAGCGCCTAATCC
ATTGGTAACAAAGGATTTCTCTTTGTTTCCATGCATATCATTTGTTCCTCAGGCGACGAAATGTGTGATTGATGTGCTTAAGAATGTGGTTGCTCCCCATCCTTCTTGTT
GTGAAGCCATTTCTAAACTCTATAATTGTTCTTCAAAGTTTCTCAAAGACATTCCCTCTGAGGATATGATTTTGGTTAAGAGTGTTTGTGCTTTGTGGGGAGTTTCTATT
TCTTAA
Protein sequenceShow/hide protein sequence
MATSATKLPLVLLLCVAIIASSVTARLGVVPAAAPNPLVTKDFSLFPCISFVPQATKCVIDVLKNVVAPHPSCCEAISKLYNCSSKFLKDIPSEDMILVKSVCALWGVSI
S