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Clc06G12710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G12710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:23631432..23631779
RNA-Seq ExpressionClc06G12710
SyntenyClc06G12710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050063.1 hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa]2.3e-3272.73Show/hide
Query:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG
        S+ TKLPL+LLVC AILA SSVTAR   V  A P   +++DFSLFP ISFVP ATK VIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K 
Subjt:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG

Query:  VCAMWGVSIS
        +CA WGVSIS
Subjt:  VCAMWGVSIS

KAA0050065.1 hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa]1.2e-3170.54Show/hide
Query:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI
        MA+S TKLPL LL C  ILA SSV AR  TV  AAP+     D SLFP  SFVP+AT+CVIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+
Subjt:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI

Query:  KGVCAMWGVSIS
        K +CA+WGVSIS
Subjt:  KGVCAMWGVSIS

KAA0050079.1 hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]4.0e-3272.73Show/hide
Query:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG
        S+ TKLPLVL VC AILA SSVTA    V  A P S   EDFSLFP ISFVP+ATKCVIDVLK  VAPHPSCC+AI++L+DCSS+FLKDIPS DMIL+K 
Subjt:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG

Query:  VCAMWGVSIS
        +CA WGVSIS
Subjt:  VCAMWGVSIS

TYK10343.1 hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa]4.4e-3170.54Show/hide
Query:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI
        MA+S TKLPL LL C  ILA SSV AR  TV  AAP      D SLFP  SFVP+AT+CVIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+
Subjt:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI

Query:  KGVCAMWGVSIS
        K +CA+WGVSIS
Subjt:  KGVCAMWGVSIS

TYK10345.1 hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]6.6e-3576.36Show/hide
Query:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG
        S+ TKLPLVLLVC AILA SSVTAR   V  A P S   EDFSLFP ISFVP+ATKCVIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS+DMIL+K 
Subjt:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG

Query:  VCAMWGVSIS
        +CA WGVSIS
Subjt:  VCAMWGVSIS

TrEMBL top hitse value%identityAlignment
A0A5A7U2D8 Uncharacterized protein1.1e-3272.73Show/hide
Query:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG
        S+ TKLPL+LLVC AILA SSVTAR   V  A P   +++DFSLFP ISFVP ATK VIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+K 
Subjt:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG

Query:  VCAMWGVSIS
        +CA WGVSIS
Subjt:  VCAMWGVSIS

A0A5A7U8Y3 Uncharacterized protein5.6e-3270.54Show/hide
Query:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI
        MA+S TKLPL LL C  ILA SSV AR  TV  AAP+     D SLFP  SFVP+AT+CVIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+
Subjt:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI

Query:  KGVCAMWGVSIS
        K +CA+WGVSIS
Subjt:  KGVCAMWGVSIS

A0A5A7U9B0 Uncharacterized protein1.9e-3272.73Show/hide
Query:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG
        S+ TKLPLVL VC AILA SSVTA    V  A P S   EDFSLFP ISFVP+ATKCVIDVLK  VAPHPSCC+AI++L+DCSS+FLKDIPS DMIL+K 
Subjt:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG

Query:  VCAMWGVSIS
        +CA WGVSIS
Subjt:  VCAMWGVSIS

A0A5D3CEQ4 Uncharacterized protein2.1e-3170.54Show/hide
Query:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI
        MA+S TKLPL LL C  ILA SSV AR  TV  AAP      D SLFP  SFVP+AT+CVIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS DMIL+
Subjt:  MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILI

Query:  KGVCAMWGVSIS
        K +CA+WGVSIS
Subjt:  KGVCAMWGVSIS

A0A5D3CFS6 Uncharacterized protein3.2e-3576.36Show/hide
Query:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG
        S+ TKLPLVLLVC AILA SSVTAR   V  A P S   EDFSLFP ISFVP+ATKCVIDVLK AVAPHPSCC+AIS+L+DCSS+FLKDIPS+DMIL+K 
Subjt:  SSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKG

Query:  VCAMWGVSIS
        +CA WGVSIS
Subjt:  VCAMWGVSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCACCCACCAAGTTACCACTTGTACTACTAGTTTGCTTTGCCATTTTAGCACTATCATCGGTAACGGCTCGTTCAGAAACAGTGCCAACAGCAGCTCCTGA
TTCGTTCGTAACTGAGGATTTCTCTTTATTCCCTTTCATATCATTTGTTCCCGAGGCGACGAAGTGTGTGATTGATGTGCTTAAACAGGCGGTTGCTCCTCATCCTTCTT
GTTGCAAAGCCATTTCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGACATTCCCTCCACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGGGGAGTTTCT
ATTTCTTAG
mRNA sequenceShow/hide mRNA sequence
GTACCAACAATGGCATCATCACCCACCAAGTTACCACTTGTACTACTAGTTTGCTTTGCCATTTTAGCACTATCATCGGTAACGGCTCGTTCAGAAACAGTGCCAACAGC
AGCTCCTGATTCGTTCGTAACTGAGGATTTCTCTTTATTCCCTTTCATATCATTTGTTCCCGAGGCGACGAAGTGTGTGATTGATGTGCTTAAACAGGCGGTTGCTCCTC
ATCCTTCTTGTTGCAAAGCCATTTCTAAACTCTATGATTGTTCATCCGAGTTTCTCAAAGACATTCCCTCCACCGATATGATTTTGATTAAGGGTGTTTGTGCTATGTGG
GGAGTTTCTATTTCTTAG
Protein sequenceShow/hide protein sequence
MASSPTKLPLVLLVCFAILALSSVTARSETVPTAAPDSFVTEDFSLFPFISFVPEATKCVIDVLKQAVAPHPSCCKAISKLYDCSSEFLKDIPSTDMILIKGVCAMWGVS
IS