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Clc06G12740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G12740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr06:23653585..23657151
RNA-Seq ExpressionClc06G12740
SyntenyClc06G12740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050064.1 hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]1.0e-2666.06Show/hide
Query:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM
        AAKS + ST+++ALVF V + ILAPS  A T A APSP  +       FS CAPFILEAT+C+ DVIKLPVAPHPSCCKAIS LNDCAPEI+  IP   M
Subjt:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM

Query:  DVIKKICAL
        DVIKKIC L
Subjt:  DVIKKICAL

KAA0050068.1 hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]2.3e-2663.46Show/hide
Query:  KSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKK
        + ++   MKI+L F V +AILAPS  A+T AAAPSP  L    FS C PFIL+AT+CV  VIK PVAPHPSCCKAIS LNDC+PE++Q IP   MDVIKK
Subjt:  KSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKK

Query:  ICAL
        IC+L
Subjt:  ICAL

KAA0050069.1 hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa]5.8e-3880.56Show/hide
Query:  MAAKSLNVSTMKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMD
        MAA+SLNVS MK+ LVF V +AILAPS TMA TTAAAPSPS    FPF KCAPFILEATLCV DVIK P+APHPSCCKAISKLNDCAPEI+QKIP  DMD
Subjt:  MAAKSLNVSTMKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMD

Query:  VIKKICAL
        VIKKIC+L
Subjt:  VIKKICAL

TYK10334.1 hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]4.0e-3175.51Show/hide
Query:  MKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKKICAL
        MK+ LVF V +AILAPS TMA TTAAAPSPS    FPF KCAPFILEATLCV  VIK P+APHPSCCKAISKL DCAP+I+QKIP +DM+VIKK C+L
Subjt:  MKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKKICAL

TYK10344.1 hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]2.7e-2766.97Show/hide
Query:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM
        AAKS + ST+++ALVF V + ILAPS  A T A APSP  +       FS CAPFILEAT+C+ DVIKLPVAPHPSCCKAIS LNDCAPEI+Q IP   M
Subjt:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM

Query:  DVIKKICAL
        DVIKKIC L
Subjt:  DVIKKICAL

TrEMBL top hitse value%identityAlignment
A0A0A0LTD6 Uncharacterized protein6.5e-2764.55Show/hide
Query:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSP----SELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPAD
        A KS + ST+++A+VF V + ILAPS  A T A APSP     + +   FS CAPFILEAT+CV DVIKLPVA HPSCCKAIS LNDCAP+I+Q IP  D
Subjt:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSP----SELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPAD

Query:  MDVIKKICAL
        MDVIKKIC L
Subjt:  MDVIKKICAL

A0A5A7U4A7 Uncharacterized protein4.9e-2766.06Show/hide
Query:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM
        AAKS + ST+++ALVF V + ILAPS  A T A APSP  +       FS CAPFILEAT+C+ DVIKLPVAPHPSCCKAIS LNDCAPEI+  IP   M
Subjt:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM

Query:  DVIKKICAL
        DVIKKIC L
Subjt:  DVIKKICAL

A0A5A7U9A1 Uncharacterized protein2.8e-3880.56Show/hide
Query:  MAAKSLNVSTMKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMD
        MAA+SLNVS MK+ LVF V +AILAPS TMA TTAAAPSPS    FPF KCAPFILEATLCV DVIK P+APHPSCCKAISKLNDCAPEI+QKIP  DMD
Subjt:  MAAKSLNVSTMKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMD

Query:  VIKKICAL
        VIKKIC+L
Subjt:  VIKKICAL

A0A5D3CGK9 Uncharacterized protein1.9e-3175.51Show/hide
Query:  MKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKKICAL
        MK+ LVF V +AILAPS TMA TTAAAPSPS    FPF KCAPFILEATLCV  VIK P+APHPSCCKAISKL DCAP+I+QKIP +DM+VIKK C+L
Subjt:  MKIALVFFVYVAILAPS-TMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKKICAL

A0A5D3CGL7 Uncharacterized protein1.3e-2766.97Show/hide
Query:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM
        AAKS + ST+++ALVF V + ILAPS  A T A APSP  +       FS CAPFILEAT+C+ DVIKLPVAPHPSCCKAIS LNDCAPEI+Q IP   M
Subjt:  AAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSEL---NKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADM

Query:  DVIKKICAL
        DVIKKIC L
Subjt:  DVIKKICAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAAAGTCATTGAACGTATCCACAATGAAGATAGCACTTGTATTCTTTGTTTATGTAGCAATTTTAGCGCCATCAACAATGGCTAGCACAACAGCTGCA
GCACCTAGTCCATCAGAACTTAACAAATTTCCTTTCTCTAAATGTGCTCCTTTTATTTTAGAGGCGACGTTGTGTGTGGCAGATGTTATCAAGCTTCCAGTTGCT
CCCCATCCTTCTTGTTGCAAAGCCATTTCTAAGCTCAACGACTGTGCCCCTGAAATTTTTCAAAAGATTCCCCCTGCTGACATGGATGTGATTAAGAAGATTTGT
GCTTTGCTTCTCAACCTCTATGAGAACAAGGGGAGGTTGATCAAGCGCCCAACTCAAGCCAAATGGCCAAGTAGGCCTCCTTGGCCTCAACCATCAAGGTCGAGG
TGGGGCCACGGTCGAGGCCAACAAAAAGTTGGGCTCAAGGGGGGACTTGGAATCAACAAGCTCAAACATACTAATATTGCCCTCCTAGGTAAGTGGATCTTGAGA
TACTTCTCTGAAACCAATAGCCTCGGGAAGAAACTCATAGATGCTAAATATGGCAAAGACACCCTGAAGTTGTCCCGACCAGCTGCAGATTCTCGAGTTCCAAAG
CCCCTTGGTTTCGTATCAGTAAACTTGGCCAAGACATTAGCAGCAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAAAGTCATTGAACGTATCCACAATGAAGATAGCACTTGTATTCTTTGTTTATGTAGCAATTTTAGCGCCATCAACAATGGCTAGCACAACAGCTGCA
GCACCTAGTCCATCAGAACTTAACAAATTTCCTTTCTCTAAATGTGCTCCTTTTATTTTAGAGGCGACGTTGTGTGTGGCAGATGTTATCAAGCTTCCAGTTGCT
CCCCATCCTTCTTGTTGCAAAGCCATTTCTAAGCTCAACGACTGTGCCCCTGAAATTTTTCAAAAGATTCCCCCTGCTGACATGGATGTGATTAAGAAGATTTGT
GCTTTGCTTCTCAACCTCTATGAGAACAAGGGGAGGTTGATCAAGCGCCCAACTCAAGCCAAATGGCCAAGTAGGCCTCCTTGGCCTCAACCATCAAGGTCGAGG
TGGGGCCACGGTCGAGGCCAACAAAAAGTTGGGCTCAAGGGGGGACTTGGAATCAACAAGCTCAAACATACTAATATTGCCCTCCTAGGTAAGTGGATCTTGAGA
TACTTCTCTGAAACCAATAGCCTCGGGAAGAAACTCATAGATGCTAAATATGGCAAAGACACCCTGAAGTTGTCCCGACCAGCTGCAGATTCTCGAGTTCCAAAG
CCCCTTGGTTTCGTATCAGTAAACTTGGCCAAGACATTAGCAGCAATTTAA
Protein sequenceShow/hide protein sequence
MAAKSLNVSTMKIALVFFVYVAILAPSTMASTTAAAPSPSELNKFPFSKCAPFILEATLCVADVIKLPVAPHPSCCKAISKLNDCAPEIFQKIPPADMDVIKKIC
ALLLNLYENKGRLIKRPTQAKWPSRPPWPQPSRSRWGHGRGQQKVGLKGGLGINKLKHTNIALLGKWILRYFSETNSLGKKLIDAKYGKDTLKLSRPAADSRVPK
PLGFVSVNLAKTLAAI